Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Forward (+)

54741881 .. 54742249

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG409900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTATGATCCCGAAGGTTACTCTCTTTGGTTTTGCGAGTACAAGTACAATGATGAAAATACTGTTTCATTCGTCACTCTGAATAAAGTGGGCGGTTTTCTACAGCGAATGGATTTGGCTCGTAAGTATGCTTTTGGGAAGATGTTGGTGATTGGCTCTGAGCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGCGGGCAAGAAATTCCCCAGTTCATAATGGATGAGTGTTATGACATGGAACTGTATCATTGGCGGAAGGTTGATATCACTGATGAGGATCAAAAAGAGCATGTGAATCAGATGATTGAAGATCATGAGCTCTTTGAGGGGGAGTCATTGTTGGATGCCAAATGTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

122

Amino Acids

14.6

Weight (kDa)

4.74

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	2 - 69	5.5e-27	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	198
AciI	CCGC	4 cut(s)	93, 196, 198, 259
AclWI	GGATC	2 cut(s)	2, 291
AcsI	RAATTY	1 cut(s)	207
AfaI	GTAC	2 cut(s)	41, 47
AgsI	TTSAA	3 cut(s)	172, 314, 364
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	2 cut(s)	2, 291
ApoI	RAATTY	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	160, 187
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	101
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse1I	ACTGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	232, 355
BseJI	GATNNNNATC	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	7, 283, 316
BspACI	CCGC	4 cut(s)	93, 196, 198, 259
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	319
BspPI	GGATC	2 cut(s)	2, 291
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	7, 283, 316
Bst4CI	ACNGT	2 cut(s)	64, 249
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	232, 355
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	10, 286, 319
BstMBI	GATC	3 cut(s)	7, 283, 316
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	101
BstUI	CGCG	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	232, 355
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	200
CciI	TCATGA	1 cut(s)	319
Cfr42I	CCGCGG	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	40, 46
CviAII	CATG	3 cut(s)	241, 296, 320
CviJI	RGCY	6 cut(s)	119, 156, 163, 183, 190, 325
CviKI_1	RGCY	6 cut(s)	119, 156, 163, 183, 190, 325
CviQI	GTAC	2 cut(s)	40, 46
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	3 cut(s)	9, 285, 318
DpnII	GATC	3 cut(s)	7, 283, 316
EciI	GGCGGA	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	3 cut(s)	244, 299, 323
FaiI	YATR	7 cut(s)	6, 129, 221, 237, 242, 297, 321
FatI	CATG	3 cut(s)	240, 295, 319
FauI	CCCGC	1 cut(s)	191
FokI	GGATG	2 cut(s)	239, 362
FriOI	GRGCYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	244, 299, 323
HinfI	GANTC	2 cut(s)	301, 338
HphI	GGTGA	2 cut(s)	160, 187
Hpy188I	TCNGA	3 cut(s)	81, 160, 306
Hpy188III	TCNNGA	2 cut(s)	11, 320
HpyAV	CCTTC	3 cut(s)	8, 172, 256
HpyCH4III	ACNGT	2 cut(s)	64, 249
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	244, 299, 323
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	7, 283, 316
LpnPI	CCDG	1 cut(s)	227
LweI	GCATC	1 cut(s)	340
MaeIII	GTNAC	2 cut(s)	17, 73
MalI	GATC	3 cut(s)	9, 285, 318
MboI	GATC	3 cut(s)	7, 283, 316
MboII	GAAGA	2 cut(s)	151, 326
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	3 cut(s)	174, 274, 325
MspA1I	CMGCKG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	198
NdeII	GATC	3 cut(s)	7, 283, 316
NlaIII	CATG	3 cut(s)	244, 299, 323
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	327
RsaI	GTAC	2 cut(s)	41, 47
RsaNI	GTAC	2 cut(s)	40, 46
SacI	GAGCTC	1 cut(s)	327
SacII	CCGCGG	1 cut(s)	199
Sau3AI	GATC	3 cut(s)	7, 283, 316
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	4 cut(s)	19, 177, 267, 327
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	101
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	4 cut(s)	93, 196, 198, 259
SstI	GAGCTC	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	64, 249
TasI	AATT	1 cut(s)	207
TatI	WGTACW	2 cut(s)	39, 45
TfiI	GAWTC	1 cut(s)	301
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	57, 69, 208
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.