Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

55716794 .. 55718840

Gene Structure 2047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG427200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTTTGTCGAACAAGACTCCCGAGTTTCTCAAAATGAATCCCATTGGGAAGGTTCCTGTGTTGGAAACGCCGGACGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGTTACTCATTTGAAGGCGGACAATCCCCTTTACGGTTCTTCCTTGATTGAATATGCCCTTGTGGAGCAATGGATTGATTTTGCAACATTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTATCGGTTTTGCAGTCTACCTTCCTCCGGCTTCTGGGACATGTATGATCCAGAGGGTTACTCTCTTTGGTTTTGCGATTACAAATACAATGATGCATGAGAATACAGTCTCATTCGTGACTTTAAACAAGGTGGCCGGCTTTCTGCAGCGGATGGATTTGGCTCGTAGATATGCGTTTGGGAAGATGTTGGTGATTGGATCTGATCCTCCTTTCAAGGGGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGATATGGAACTGTATGATTGGCATAAGGTTGATATCACTGATGAGGATCAAAAGGAGCACGTGAACCAGATGATTGAAGTTCAGGAGCCTTTTGAGGGGGAGGCCTTGTTGGATGCCAAATGCTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

217

Amino Acids

24.78

Weight (kDa)

4.95

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 39	6.5e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	5 - 41	4.7e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	6 - 46	5.5e-06	Glutathione S-transferase, N-terminal domain
EF1G	PF00647	112 - 164	2.9e-13	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	2 cut(s)	109, 241
AciI	CCGC	3 cut(s)	131, 239, 391
AclWI	GGATC	4 cut(s)	283, 440, 448, 576
AcoI	YGGCCR	1 cut(s)	375
AcvI	CACGTG	1 cut(s)	583
AfiI	CCNNNNNNNGG	6 cut(s)	146, 245, 268, 275, 458, 617
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	5 cut(s)	127, 164, 457, 599, 649
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	4 cut(s)	283, 440, 448, 576
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	375, 624
ApeKI	GCWGC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	355
BfmI	CTRYAG	1 cut(s)	386
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	57, 495, 609
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	3 cut(s)	202, 324, 625
BmuI	ACTGGG	1 cut(s)	493
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
BsaAI	YACGTR	1 cut(s)	583
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 245, 268, 275, 458, 617
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	3 cut(s)	102, 103, 188
Bse8I	GATNNNNATC	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	2 cut(s)	399, 640
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	6 cut(s)	146, 245, 268, 275, 458, 617
BseMI	GCAATG	3 cut(s)	102, 103, 188
BseNI	ACTGG	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	2 cut(s)	109, 241
BshFI	GGCC	2 cut(s)	377, 626
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	74, 269, 378
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	6 cut(s)	146, 245, 268, 275, 458, 617
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	377, 626
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	288, 440, 445, 568
BspACI	CCGC	3 cut(s)	131, 239, 391
BspANI	GGCC	2 cut(s)	377, 626
BspFNI	CGCG	2 cut(s)	109, 241
BspLI	GGNNCC	3 cut(s)	57, 495, 609
BspMAI	CTGCAG	1 cut(s)	390
BspPI	GGATC	4 cut(s)	283, 440, 448, 576
BsrDI	GCAATG	3 cut(s)	102, 103, 188
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	499
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	4 cut(s)	288, 440, 445, 568
Bst4CI	ACNGT	4 cut(s)	80, 149, 349, 534
BstBAI	YACGTR	1 cut(s)	583
BstC8I	GCNNGC	1 cut(s)	379
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	399, 640
BstFNI	CGCG	2 cut(s)	109, 241
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	4 cut(s)	291, 443, 448, 571
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	4 cut(s)	288, 440, 445, 568
BstNSI	RCATGY	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	386
BstUI	CGCG	2 cut(s)	109, 241
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	377, 626
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	399, 640
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	80
CviAII	CATG	2 cut(s)	282, 338
CviJI	RGCY	8 cut(s)	272, 377, 381, 404, 468, 475, 610, 626
CviKI_1	RGCY	8 cut(s)	272, 377, 381, 404, 468, 475, 610, 626
DpnI	GATC	4 cut(s)	290, 442, 447, 570
DpnII	GATC	4 cut(s)	288, 440, 445, 568
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	80
Eco72I	CACGTG	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	339
FaeI	CATG	2 cut(s)	285, 341
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	2 cut(s)	281, 337
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	2 cut(s)	406, 647
Fsp4HI	GCNGC	1 cut(s)	389
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	377, 626
HapII	CCGG	3 cut(s)	74, 269, 378
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	285, 341
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	2 cut(s)	19, 40
HpaII	CCGG	3 cut(s)	74, 269, 378
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	2 cut(s)	259, 586
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	4 cut(s)	23, 292, 358, 605
Hpy8I	GTNNAC	2 cut(s)	259, 586
HpyAV	CCTTC	4 cut(s)	46, 121, 272, 457
HpyCH4III	ACNGT	4 cut(s)	80, 149, 349, 534
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	4 cut(s)	197, 254, 337, 388
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	2 cut(s)	285, 341
HspAI	GCGC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	288, 440, 445, 568
LmnI	GCTCC	3 cut(s)	178, 577, 607
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	3 cut(s)	202, 324, 625
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	3 cut(s)	115, 298, 358
MalI	GATC	4 cut(s)	290, 442, 447, 570
MboI	GATC	4 cut(s)	288, 440, 445, 568
MboII	GAAGA	2 cut(s)	144, 436
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	45, 612
MnlI	CCTC	7 cut(s)	276, 288, 459, 484, 559, 610, 616
Mph1103I	ATGCAT	1 cut(s)	339
MroNI	GCCGGC	1 cut(s)	377
MseI	TTAA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	3 cut(s)	74, 269, 378
MvnI	CGCG	2 cut(s)	109, 241
NaeI	GCCGGC	1 cut(s)	379
NdeII	GATC	4 cut(s)	288, 440, 445, 568
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	2 cut(s)	285, 341
NlaIV	GGNNCC	3 cut(s)	57, 495, 609
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	339
NspI	RCATGY	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	626
PciI	ACATGT	1 cut(s)	281
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	1 cut(s)	13
PmaCI	CACGTG	1 cut(s)	583
PmlI	CACGTG	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	583
PscI	ACATGT	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	583
PspN4I	GGNNCC	3 cut(s)	57, 495, 609
PspPI	GGNCC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	4 cut(s)	288, 440, 445, 568
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	582
SetI	ASST	6 cut(s)	57, 264, 375, 495, 552, 585
SfaNI	GCATC	3 cut(s)	202, 324, 625
SfcI	CTRYAG	1 cut(s)	386
SinI	GGWCC	1 cut(s)	80
Sse9I	AATT	1 cut(s)	507
SseBI	AGGCCT	1 cut(s)	626
SsiI	CCGC	3 cut(s)	131, 239, 391
SspI	AATATT	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	626
TaaI	ACNGT	4 cut(s)	80, 149, 349, 534
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	507
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	53, 223, 493, 528
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	80
XceI	RCATGY	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.