Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Forward (+)

33754710 .. 33755079

Gene Structure 370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG176700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTATGATCAAGCGGGTTACGCTCTTTGGTTTTGCGATTACAAATACAACGATGAAAATACAGTCTCATTCGTGACTTTAAACAAGGTGGGCGGTTTTCTGCAACGGATGGATTTGCCTAGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTGATATCACTGATGAGGATCAAAAGAAGCGTGTGAACCAGATGATTGAAGATCACGAGCCTTTTGAGGGGGAGGCTTTTTTGGATGCCAAATGCTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

103

Amino Acids

12.01

Weight (kDa)

4.72

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	2 - 69	1.3e-24	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 93
AclWI	GGATC	2 cut(s)	155, 234
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	172, 257
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	155, 234
AsuHPI	GGTGA	2 cut(s)	160, 187
BauI	CACGAG	1 cut(s)	263
BccI	CCATC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	114, 298
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	7, 160, 226, 259
BspACI	CCGC	2 cut(s)	14, 93
BspPI	GGATC	2 cut(s)	155, 234
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	4 cut(s)	7, 160, 226, 259
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	114, 298
BstKTI	GATC	4 cut(s)	10, 163, 229, 262
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	7, 160, 226, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	114, 298
BtsIMutI	CAGTG	1 cut(s)	216
CviJI	RGCY	4 cut(s)	183, 190, 268, 284
CviKI_1	RGCY	4 cut(s)	183, 190, 268, 284
DpnI	GATC	4 cut(s)	9, 162, 228, 261
DpnII	GATC	4 cut(s)	7, 160, 226, 259
DraI	TTTAAA	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	214
EcoRV	GATATC	1 cut(s)	214
FaiI	YATR	2 cut(s)	6, 129
FauI	CCCGC	1 cut(s)	7
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	121, 305
FspBI	CTAG	1 cut(s)	120
HphI	GGTGA	2 cut(s)	160, 187
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	73, 263
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 160, 226, 259
LpnPI	CCDG	1 cut(s)	260
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	17, 73
MalI	GATC	4 cut(s)	9, 162, 228, 261
MboI	GATC	4 cut(s)	7, 160, 226, 259
MboII	GAAGA	2 cut(s)	151, 269
MnlI	CCTC	5 cut(s)	174, 199, 217, 268, 274
MseI	TTAA	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	4 cut(s)	7, 160, 226, 259
NmuCI	GTSAC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	80
Sau3AI	GATC	4 cut(s)	7, 160, 226, 259
SetI	ASST	3 cut(s)	90, 177, 210
SfaNI	GCATC	1 cut(s)	283
SsiI	CCGC	2 cut(s)	14, 93
SspMI	CTAG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	2 cut(s)	121, 185
TspRI	CASTG	1 cut(s)	223
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.