Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

53558714 .. 53559461

Gene Structure 748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTATGATCCAGAGGGTTACTCCCTTTGGTTTTGCAATTACAAGTACAACGATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGCGGTTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGTGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACTGTATGATTGGTGTAAGGTTGATATAACTGATGAGGATCAAAAGGAGTGCGTGAACCAGATGATTGAAGATCACGAGCCTTTTGAGGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

122

Amino Acids

14.44

Weight (kDa)

4.45

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	2 - 69	1.3e-25	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 106
AclWI	GGATC	3 cut(s)	2, 155, 291
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	82, 172, 314, 364
AlwI	GGATC	3 cut(s)	2, 155, 291
ApeKI	GCWGC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	160, 187
BauI	CACGAG	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	208
BplI	GAGNNNNNCTC	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	114, 355
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	7, 160, 283, 316
BspACI	CCGC	2 cut(s)	93, 106
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	105
BspPI	GGATC	3 cut(s)	2, 155, 291
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	4 cut(s)	7, 160, 283, 316
BssSI	CACGAG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	64, 249
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	114, 355
BstKTI	GATC	4 cut(s)	10, 163, 286, 319
BstMBI	GATC	4 cut(s)	7, 160, 283, 316
BstSFI	CTRYAG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	114, 355
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	5 cut(s)	119, 183, 190, 325, 341
CviKI_1	RGCY	5 cut(s)	119, 183, 190, 325, 341
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	4 cut(s)	9, 162, 285, 318
DpnII	GATC	4 cut(s)	7, 160, 283, 316
FaeI	CATG	1 cut(s)	244
FaiI	YATR	7 cut(s)	6, 129, 221, 237, 242, 252, 272
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	2 cut(s)	121, 362
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	244
HphI	GGTGA	2 cut(s)	160, 187
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	11, 320
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	64, 249
HpyCH4V	TGCA	2 cut(s)	36, 103
Hsp92II	CATG	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	7, 160, 283, 316
LpnPI	CCDG	3 cut(s)	24, 227, 317
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	340
MaeIII	GTNAC	2 cut(s)	17, 73
MalI	GATC	4 cut(s)	9, 162, 285, 318
MboI	GATC	4 cut(s)	7, 160, 283, 316
MboII	GAAGA	2 cut(s)	151, 326
MluCI	AATT	2 cut(s)	37, 222
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	6 cut(s)	7, 174, 199, 274, 325, 331
MspA1I	CMGCKG	1 cut(s)	106
NdeII	GATC	4 cut(s)	7, 160, 283, 316
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	4 cut(s)	7, 160, 283, 316
SetI	ASST	4 cut(s)	90, 177, 210, 267
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	37, 222
SsiI	CCGC	2 cut(s)	93, 106
TaaI	ACNGT	2 cut(s)	64, 249
TasI	AATT	2 cut(s)	37, 222
TatI	WGTACW	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	57, 69, 208, 243
TspGWI	ACGGA	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.