Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

33949276 .. 33950451

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTATGATCAAGCGGGTTACGCTCTTTGGTTTTGCGATTACAAATACAACGATGAAAATACAGTCTCACTCGTGACTTTAAACAAGGTGGGCGGTTTTCTGCAACGGATGGATTTGCCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGATGATTGAAGATCACAAGCCTTTTGAAGGGGAGGCTTTTTTGGATGCCAAATGCCTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

92

Amino Acids

10.66

Weight (kDa)

5.35

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	2 - 69	3.2e-24	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 93
AclWI	GGATC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	172, 224, 242
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	160, 187
AvaI	CYCGRG	1 cut(s)	272
BauI	CACGAG	1 cut(s)	71
BccI	CCATC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	210
BmsI	GCATC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	114, 265
BseLI	CCNNNNNNNGG	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	272
Bsp143I	GATC	3 cut(s)	7, 160, 226
BspACI	CCGC	2 cut(s)	14, 93
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	7, 160, 226
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	196
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	114, 265
BstKTI	GATC	3 cut(s)	10, 163, 229
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	7, 160, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	114, 265
CviJI	RGCY	4 cut(s)	183, 190, 235, 251
CviKI_1	RGCY	4 cut(s)	183, 190, 235, 251
DpnI	GATC	3 cut(s)	9, 162, 228
DpnII	GATC	3 cut(s)	7, 160, 226
DraI	TTTAAA	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	240
FaiI	YATR	2 cut(s)	6, 129
FauI	CCCGC	1 cut(s)	7
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	121, 272
HphI	GGTGA	2 cut(s)	160, 187
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	172, 236
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 160, 226
LpnPI	CCDG	1 cut(s)	227
LweI	GCATC	1 cut(s)	250
MaeIII	GTNAC	2 cut(s)	17, 73
MalI	GATC	3 cut(s)	9, 162, 228
MboI	GATC	3 cut(s)	7, 160, 226
MboII	GAAGA	2 cut(s)	151, 236
MnlI	CCTC	4 cut(s)	129, 174, 199, 241
MseI	TTAA	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	3 cut(s)	7, 160, 226
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	80
Sau3AI	GATC	3 cut(s)	7, 160, 226
SetI	ASST	3 cut(s)	90, 177, 210
SfaNI	GCATC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	2 cut(s)	14, 93
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	2 cut(s)	121, 185
XagI	CCTNNNNNAGG	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.