Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Forward (+)

40443731 .. 40444234

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGTTTTGTCTATGCCATTGGGTATGGCAGCGATGTTGATCTTGGGTCCTTAGGGTTTGATCTGTTTGGACCGAAGACCAATGCAAAGGACGGGGGAGCTCTATTACAAGAGTGTGACGATGATGTCGTGGTGAGGATGCTGATGTCGGCGAAGCTGGCTGCTGATGGCGGAATTACATGGGCTTGGGCTCGGGTCCATAACTGGATTTGGGTGTCCAGATTAGTATGGCAAGCGGTGTGTCTCTTTTGGGCTCCTATCCGTGTCGCCCAACTCTTGATGGTTTGGACGGCGAAGGCTGAGGACTTACCGTCGACTATGTCAGTGTTCAAATCATGGCTGGTTGAATGGCTGTCGGCGACTCTGGTGGCAGGGAAAGCATGCTGGGGTGTCCATGGGCTTCTTGGGCCACTGGTTGAGACTACAACTCTGAAATCAAGTTTTGGGTCGGGATCTCTTGGGTCTAGAATGAGTATTGGGTCTTTGTACCCATTATTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.16

Weight (kDa)

6.05

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	2 cut(s)	171, 236
AclWI	GGATC	1 cut(s)	460
AfaI	GTAC	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	331, 347
AhdI	GACNNNNNGTC	1 cut(s)	310
AluBI	AGCT	2 cut(s)	101, 157
AluI	AGCT	2 cut(s)	101, 157
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	248, 413
AlwI	GGATC	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	2 cut(s)	30, 161
AspS9I	GGNCC	4 cut(s)	48, 71, 196, 407
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	3 cut(s)	48, 71, 196
AxyI	CCTNAGG	1 cut(s)	52
BanII	GRGCYC	3 cut(s)	103, 193, 256
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	42, 148
BccI	CCATC	2 cut(s)	161, 274
BceAI	ACGGC	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	248, 413
BfaI	CTAG	1 cut(s)	465
BisI	GCNGC	2 cut(s)	31, 162
BlsI	GCNGC	2 cut(s)	32, 163
Bme18I	GGWCC	3 cut(s)	48, 71, 196
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	4 cut(s)	48, 71, 196, 407
BmiI	GGNNCC	3 cut(s)	49, 197, 255
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	394
Bse1I	ACTGG	2 cut(s)	209, 417
Bse21I	CCTNAGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	209, 417
BseXI	GCAGC	2 cut(s)	42, 148
BseYI	CCCAGC	1 cut(s)	384
BshFI	GGCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	248, 413
BsnI	GGCC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	3 cut(s)	103, 193, 256
Bsp143I	GATC	3 cut(s)	40, 61, 452
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	2 cut(s)	171, 236
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	49, 197, 255
BspPI	GGATC	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	209, 417
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	3 cut(s)	40, 61, 452
BssT1I	CCWWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	312
BstC8I	GCNNGC	3 cut(s)	159, 234, 382
BstDEI	CTNAG	2 cut(s)	52, 300
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	3 cut(s)	43, 64, 455
BstMAI	GTCTC	2 cut(s)	248, 413
BstMBI	GATC	3 cut(s)	40, 61, 452
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 377, 406
BstNSI	RCATGY	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	42, 148
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
Bsu36I	CCTNAGG	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	330, 410
Cac8I	GCNNGC	3 cut(s)	159, 234, 382
Cfr13I	GGNCC	4 cut(s)	48, 71, 196, 407
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	4 cut(s)	180, 336, 381, 395
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	2 cut(s)	52, 300
DpnI	GATC	3 cut(s)	42, 63, 454
DpnII	GATC	3 cut(s)	40, 61, 452
DrdI	GACNNNNNNGTC	1 cut(s)	125
DriI	GACNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	3 cut(s)	103, 193, 256
Eco47I	GGWCC	3 cut(s)	48, 71, 196
Eco53kI	GAGCTC	1 cut(s)	101
Eco81I	CCTNAGG	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	3 cut(s)	103, 193, 256
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	4 cut(s)	183, 339, 384, 398
FaiI	YATR	9 cut(s)	15, 27, 181, 201, 229, 320, 337, 382, 396
FatI	CATG	4 cut(s)	179, 335, 380, 394
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	31, 162
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	3 cut(s)	103, 193, 256
Fsp4HI	GCNGC	2 cut(s)	31, 162
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	2 cut(s)	31, 162
GsaI	CCCAGC	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	409
Hin1II	CATG	4 cut(s)	183, 339, 384, 398
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	4 cut(s)	219, 277, 450, 465
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 377, 406
HpyF3I	CTNAG	2 cut(s)	52, 300
Hsp92II	CATG	4 cut(s)	183, 339, 384, 398
Kzo9I	GATC	3 cut(s)	40, 61, 452
LmnI	GCTCC	2 cut(s)	98, 259
LpnPI	CCDG	8 cut(s)	143, 190, 232, 326, 350, 357, 370, 398
Lsp1109I	GCAGC	2 cut(s)	42, 148
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	42, 63, 454
MboI	GATC	3 cut(s)	40, 61, 452
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	3 cut(s)	103, 193, 256
MluCI	AATT	2 cut(s)	174, 499
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	2 cut(s)	129, 295
MseI	TTAA	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	158, 377, 406
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	3 cut(s)	40, 61, 452
NlaIII	CATG	4 cut(s)	183, 339, 384, 398
NlaIV	GGNNCC	3 cut(s)	49, 197, 255
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	384
PaeI	GCATGC	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	32, 163
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	49, 197, 255
PspPI	GGNCC	4 cut(s)	48, 71, 196, 407
PspPPI	RGGWCCY	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SacI	GAGCTC	1 cut(s)	103
SalI	GTCGAC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	31, 162
Sau3AI	GATC	3 cut(s)	40, 61, 452
Sau96I	GGNCC	4 cut(s)	48, 71, 196, 407
SchI	GAGTC	1 cut(s)	355
SduI	GDGCHC	3 cut(s)	103, 193, 256
SetI	ASST	2 cut(s)	103, 159
SfaNI	GCATC	1 cut(s)	129
SinI	GGWCC	3 cut(s)	48, 71, 196
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	2 cut(s)	174, 499
SsiI	CCGC	2 cut(s)	171, 236
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	314
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	174, 499
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	330, 417
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	30, 161
Tsp45I	GTSAC	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	330, 417
Tth111I	GACNNNGTC	1 cut(s)	319
VpaK11BI	GGWCC	3 cut(s)	48, 71, 196
XbaI	TCTAGA	1 cut(s)	464
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.