Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Reverse (-)

13533322 .. 13533911

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007094

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAAACCCTATTCTCTCTAGCAGCGCCTCCCCGTGGGCTCACTCTAACCCAGCCTCCTCTTGCCGCCAAGGCGCTTAGCGGCTCAGGCTGGTTTCCAATATCAGGGCACCTCTGCCCTTCCATTGATCTATCTTTGCCACTTCTGACCCCCACTATTGACGATTATTATGGCGGCGGTCTTGTAGCCTTATTAATTTGGTTTGACACCTTTGTGGCTAAATTGAACATCCCCGAGACTGCTGAGGGCGCGCTGCTAGTAGGCGGAGGAGCCCAAGGAACCATGTGGTTGCTATGGAGTGCGGAGATATGCTTTGCTGATGCCACTAGGAATGGCAGCGATGTTGATCTCGGCCCAGAGACCAATGCAAATGATGGAGGAGAGTCACTACAAGCAGGTGACGGAGATGTGGTGGTGAGAATGCTGATGCCAGCGAAGCTGGATGCTGGTGGCCGAATCTCATGGGCTCAGGCTCTGGTGCATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

16.89

Weight (kDa)

4.41

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	108
AccII	CGCG	1 cut(s)	251
AciI	CCGC	6 cut(s)	66, 81, 174, 177, 264, 302
AcoI	YGGCCR	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	35, 104
AgsI	TTSAA	1 cut(s)	226
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	439
AluI	AGCT	1 cut(s)	439
Alw26I	GTCTC	2 cut(s)	230, 353
AlwNI	CAGNNNCTG	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	352, 451
ApeKI	GCWGC	3 cut(s)	23, 253, 336
AseI	ATTAAT	1 cut(s)	194
AspLEI	GCGC	4 cut(s)	28, 76, 251, 253
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	410, 427
AvaI	CYCGRG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	3 cut(s)	42, 274, 469
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	35, 240, 348
BccI	CCATC	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	230, 353
BfaI	CTAG	3 cut(s)	20, 257, 327
BfoI	RGCGCY	2 cut(s)	29, 77
BfuAI	ACCTGC	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	24, 66, 82, 175, 254, 337
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	6 cut(s)	25, 67, 83, 176, 255, 338
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	3 cut(s)	110, 271, 280
BmsI	GCATC	3 cut(s)	310, 417, 433
Bpu10I	CCTNAGC	3 cut(s)	85, 243, 468
Bpu1102I	GCTNAGC	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	34, 69, 274
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 104
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	34, 69, 274
BseGI	GGATG	2 cut(s)	228, 448
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	35, 104
BseMII	CTCAG	3 cut(s)	99, 234, 482
BsePI	GCGCGC	1 cut(s)	249
BseRI	GAGGAG	3 cut(s)	48, 282, 393
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	3 cut(s)	35, 240, 348
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	354, 453
BshNI	GGYRCC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	35, 104
BsmAI	GTCTC	2 cut(s)	230, 353
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	354, 453
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	4 cut(s)	42, 111, 274, 469
Bsp143I	GATC	2 cut(s)	127, 346
Bsp1720I	GCTNAGC	1 cut(s)	77
BspACI	CCGC	6 cut(s)	66, 81, 174, 177, 264, 302
BspANI	GGCC	2 cut(s)	354, 453
BspCNI	CTCAG	3 cut(s)	98, 235, 481
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	3 cut(s)	110, 271, 280
BspMI	ACCTGC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	353
BssECI	CCNNGG	3 cut(s)	34, 69, 274
BssHII	GCGCGC	1 cut(s)	249
BssMI	GATC	2 cut(s)	127, 346
BssT1I	CCWWGG	2 cut(s)	69, 274
BstC8I	GCNNGC	2 cut(s)	251, 432
BstDEI	CTNAG	4 cut(s)	77, 85, 243, 468
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	228, 448
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	2 cut(s)	29, 77
BstHHI	GCGC	4 cut(s)	28, 76, 251, 253
BstKTI	GATC	2 cut(s)	130, 349
BstMAI	GTCTC	2 cut(s)	230, 353
BstMBI	GATC	2 cut(s)	127, 346
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 87, 248, 436
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	35, 240, 348
BsuRI	GGCC	2 cut(s)	354, 453
BtgI	CCRYGG	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	228, 448
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	2 cut(s)	251, 432
CaiI	CAGNNNCTG	1 cut(s)	475
CfoI	GCGC	4 cut(s)	28, 76, 251, 253
Cfr13I	GGNCC	1 cut(s)	353
CviAII	CATG	2 cut(s)	283, 462
DdeI	CTNAG	4 cut(s)	77, 85, 243, 468
DpnI	GATC	2 cut(s)	129, 348
DpnII	GATC	2 cut(s)	127, 346
EaeI	YGGCCR	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	69, 274
Eco24I	GRGCYC	3 cut(s)	42, 274, 469
Eco31I	GGTCTC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	69, 274
EcoT38I	GRGCYC	3 cut(s)	42, 274, 469
ErhI	CCWWGG	2 cut(s)	69, 274
FaeI	CATG	2 cut(s)	286, 465
FaiI	YATR	6 cut(s)	171, 284, 295, 310, 463, 483
FatI	CATG	2 cut(s)	282, 461
Fnu4HI	GCNGC	6 cut(s)	24, 66, 82, 175, 254, 337
FokI	GGATG	2 cut(s)	215, 455
FriOI	GRGCYC	3 cut(s)	42, 274, 469
Fsp4HI	GCNGC	6 cut(s)	24, 66, 82, 175, 254, 337
FspBI	CTAG	3 cut(s)	20, 257, 327
GlaI	GCGC	4 cut(s)	27, 75, 250, 252
GluI	GCNGC	6 cut(s)	24, 66, 82, 175, 254, 337
GsaI	CCCAGC	1 cut(s)	55
HaeII	RGCGCY	2 cut(s)	29, 77
HaeIII	GGCC	2 cut(s)	354, 453
HhaI	GCGC	4 cut(s)	28, 76, 251, 253
Hin1II	CATG	2 cut(s)	286, 465
Hin6I	GCGC	4 cut(s)	26, 74, 249, 251
HinP1I	GCGC	4 cut(s)	26, 74, 249, 251
HinfI	GANTC	2 cut(s)	383, 456
HphI	GGTGA	2 cut(s)	410, 427
Hpy188I	TCNGA	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	368, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 87, 248, 436
HpyF3I	CTNAG	4 cut(s)	77, 85, 243, 468
Hsp92II	CATG	2 cut(s)	286, 465
HspAI	GCGC	4 cut(s)	26, 74, 249, 251
Kzo9I	GATC	2 cut(s)	127, 346
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	3 cut(s)	35, 240, 348
LweI	GCATC	3 cut(s)	310, 417, 433
MaeI	CTAG	3 cut(s)	20, 257, 327
MaeIII	GTNAC	2 cut(s)	384, 398
MalI	GATC	2 cut(s)	129, 348
MboI	GATC	2 cut(s)	127, 346
MhlI	GDGCHC	4 cut(s)	42, 111, 274, 469
MluCI	AATT	3 cut(s)	195, 221, 484
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	7 cut(s)	39, 66, 69, 122, 238, 260, 371
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	426
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	4 cut(s)	71, 87, 248, 436
NdeII	GATC	2 cut(s)	127, 346
NlaIII	CATG	2 cut(s)	286, 465
NlaIV	GGNNCC	3 cut(s)	110, 271, 280
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	384, 398
OliI	CACNNNNGTG	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	386
PauI	GCGCGC	1 cut(s)	249
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	6 cut(s)	25, 67, 83, 176, 255, 338
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PshBI	ATTAAT	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	110, 271, 280
PspPI	GGNCC	1 cut(s)	353
PstNI	CAGNNNCTG	1 cut(s)	475
PteI	GCGCGC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	6 cut(s)	24, 66, 82, 175, 254, 337
Sau3AI	GATC	2 cut(s)	127, 346
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	4 cut(s)	42, 111, 274, 469
SetI	ASST	4 cut(s)	114, 212, 400, 441
SfaNI	GCATC	3 cut(s)	310, 417, 433
SmiMI	CAYNNNNRTG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	195, 221, 484
SsiI	CCGC	6 cut(s)	66, 81, 174, 177, 264, 302
SspMI	CTAG	3 cut(s)	20, 257, 327
StyI	CCWWGG	2 cut(s)	69, 274
TasI	AATT	3 cut(s)	195, 221, 484
TauI	GCSGC	3 cut(s)	68, 84, 177
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseFI	GTSAC	2 cut(s)	384, 398
TseI	GCWGC	3 cut(s)	23, 253, 336
Tsp45I	GTSAC	2 cut(s)	384, 398
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	194
XspI	CTAG	3 cut(s)	20, 257, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.