Rh6DG113100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004556
Physical Location & Seq
Forward (+)
14972551 .. 14972760
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG113100.1

Sequence Viewer

Length: 210 bp
ATGCAGAATTCTTGTCTCGAACTTGGCAAAGGCGATGCCACTGGGTATGGCGGTAGTGTTGATCTTGGGTCCTTGGGGTTTGATCTATTCGGATCAGAGACCAATGCGAAGGATGGAGGCGCGCCACTACAAGCATGTGATGGTGCTGTTGCGATGGGGCTGCTGATGTCAATGAAGCTGGCTGCTGGTGGCGGATTTTCATGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

6.78

Weight (kDa)

4.09

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AciI CCGC 2 cut(s) 51, 192
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 7
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 20, 92
AlwI GGATC 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 160, 182
ApoI RAATTY 1 cut(s) 7
AscI GGCGCGCC 1 cut(s) 120
AspLEI GCGC 2 cut(s) 122, 124
AspS9I GGNCC 1 cut(s) 69
AvaII GGWCC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 147, 169
BccI CCATC 3 cut(s) 107, 134, 148
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcoDI GTCTC 2 cut(s) 20, 92
BisI GCNGC 2 cut(s) 161, 183
BlsI GCNGC 2 cut(s) 162, 184
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 46
BsePI GCGCGC 1 cut(s) 120
BseXI GCAGC 2 cut(s) 147, 169
Bsh1236I CGCG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 20, 92
Bso31I GGTCTC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 61, 82, 92
BspACI CCGC 2 cut(s) 51, 192
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 72
BssHII GCGCGC 1 cut(s) 120
BssMI GATC 3 cut(s) 61, 82, 92
BssT1I CCWWGG 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 122, 180
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 2 cut(s) 122, 124
BstKTI GATC 3 cut(s) 64, 85, 95
BstMAI GTCTC 2 cut(s) 20, 92
BstMBI GATC 3 cut(s) 61, 82, 92
BstNSI RCATGY 1 cut(s) 138
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 147, 169
BtgZI GCGATG 2 cut(s) 48, 167
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 122, 180
CfoI GCGC 2 cut(s) 122, 124
Cfr13I GGNCC 1 cut(s) 69
CviAII CATG 2 cut(s) 135, 201
CviJI RGCY 4 cut(s) 160, 178, 182, 206
CviKI_1 RGCY 4 cut(s) 160, 178, 182, 206
DpnI GATC 3 cut(s) 63, 84, 94
DpnII GATC 3 cut(s) 61, 82, 92
EciI GGCGGA 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 138, 204
FaiI YATR 3 cut(s) 48, 136, 202
FatI CATG 2 cut(s) 134, 200
Fnu4HI GCNGC 2 cut(s) 161, 183
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 161, 183
GlaI GCGC 2 cut(s) 121, 123
GluI GCNGC 2 cut(s) 161, 183
HhaI GCGC 2 cut(s) 122, 124
Hin1II CATG 2 cut(s) 138, 204
Hin6I GCGC 2 cut(s) 120, 122
HinP1I GCGC 2 cut(s) 120, 122
Hpy188I TCNGA 2 cut(s) 92, 97
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 2 cut(s) 138, 204
HspAI GCGC 2 cut(s) 120, 122
Kzo9I GATC 3 cut(s) 61, 82, 92
LpnPI CCDG 3 cut(s) 27, 164, 171
Lsp1109I GCAGC 2 cut(s) 147, 169
LweI GCATC 1 cut(s) 25
MalI GATC 3 cut(s) 63, 84, 94
MboI GATC 3 cut(s) 61, 82, 92
MluCI AATT 1 cut(s) 7
MnlI CCTC 1 cut(s) 110
MvnI CGCG 1 cut(s) 122
NdeII GATC 3 cut(s) 61, 82, 92
NlaIII CATG 2 cut(s) 138, 204
NlaIV GGNNCC 1 cut(s) 70
NspI RCATGY 1 cut(s) 138
PalAI GGCGCGCC 1 cut(s) 120
PauI GCGCGC 1 cut(s) 120
PkrI GCNGC 2 cut(s) 162, 184
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 69
PspPPI RGGWCCY 1 cut(s) 69
PteI GCGCGC 1 cut(s) 120
SatI GCNGC 2 cut(s) 161, 183
Sau3AI GATC 3 cut(s) 61, 82, 92
Sau96I GGNCC 1 cut(s) 69
SetI ASST 1 cut(s) 180
SfaNI GCATC 1 cut(s) 25
SgsI GGCGCGCC 1 cut(s) 120
SinI GGWCC 1 cut(s) 69
Sse9I AATT 1 cut(s) 7
SsiI CCGC 2 cut(s) 51, 192
StyI CCWWGG 1 cut(s) 72
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 7
TscAI CASTG 1 cut(s) 46
TseI GCWGC 2 cut(s) 160, 182
TspDTI ATGAA 2 cut(s) 188, 189
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 69
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.