Rh5AG489200

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004556
Physical Location & Seq
Forward (+)
83398461 .. 83407554
9094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG489200.1

Sequence Viewer

Length: 1158 bp
ATGAAAACCCTATTCTCTCTAGCAGCGCCTCCCCGTGCACTCACTCTAACCCAGCCTCCTCTTGCCGGCCGGTTTCCAATATCAGGGCACCTCTGCCCTTCCATTGATCTATCTTTACCAGATCTAACCCCTACTATTGACCATTATTATGGAGGCGGTCTTGTAGCCCTGTTAATTTGGGCTGGCAAAAGCCATGGCAGTGGTGAAAGGGTGGAACGCTTCATCCGCGATGGTGACCCGGTTTCCTCGTCCTGGTTGCCTCCTACAATTGCTGAGACCTCTATGACGCCTATGTGGCTACAATTGAACATCCCTGAGGCTGCTGAGGGCATGCTGCTAGTAGGCGGAGGAGCTAAAGGAACCATTTGTCTGCTGTGGATTACGAAGATATGCTTTGCCGATGCCACTGGGTATGGCGATGATGTTCATCTCGGCCCGGAGACTAATGCAAAGGATGGAGGAGAGTCACTACAAGCAGGTGACGGAGATGCCGTGATCAGTGACTTTACTCGTATTGAGGTCATAAAATGTATACAATCGCCAGAGAAAAGGTTTCGAGGTGTTAATCTTTCTGGCCTGGATCTATCAAAACTGGACTTGTCAGAGATAGACTTCAGCTATCCATGTCTGCGAAATGTATCCTTCTCATGTGCAAACCTTTATCGGGCTAAATTTTGGAAGGCAGATATTGACGGTGCCACATTTTGTGATTCAGATTTGCGAGAAAGTGTATTTACTGAAGCAAAAATTGGTGGAGTCTCTTTTGTTGGTGCAAATCTTGCAAGCACAAACTACAGTCATTACAATCTTTTAGGTGAACACTGTTTGGGCGTTGGTGCTGGGTCTGTCATCTTTCACAATGCAACTTTGGAGAAAAGTGAATTTGTCAAGTCAAATATCCAGGGAGCTTCTTTAAAAAGTGCATGTTTAATCAATAGCAGCTTTGTTGGGGCAAACTTGAGTAATACAGATCTTCGAGATGCTGTTGTTACAAACACTAACTTAGAAGTGGCCATACTGAAACAAGCCAGTATGAAGGGGATCAAGTTGAGTAATATTAATTTGAAATGTGCAAACCTTGTAAATGCTTATTTAGTTGGAGTGGATCTCCAAGGAGCTTGTTTGGATCATGCAAATCTGGATGGAGCCAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

385

Amino Acids

41.02

Weight (kDa)

5.4

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pentapeptide_4 PF13599 184 - 255 7.9e-07 Pentapeptide repeat region
Pentapeptide_4 PF13599 211 - 295 3.3e-06 Pentapeptide repeat region
Pentapeptide_4 PF13599 283 - 350 6.8e-06 Pentapeptide repeat region
Pentapeptide PF00805 318 - 356 1.9e-06 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 350 - 383 2.6e-07 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 467
Acc36I ACCTGC 1 cut(s) 467
AccB1I GGYRCC 2 cut(s) 87, 695
AccI GTMKAC 1 cut(s) 532
AccII CGCG 1 cut(s) 228
AciI CCGC 3 cut(s) 156, 226, 345
AclWI GGATC 4 cut(s) 588, 1049, 1113, 1134
AcoI YGGCCR 2 cut(s) 67, 1011
AcsI RAATTY 2 cut(s) 671, 881
AcuI CTGAAG 2 cut(s) 598, 759
AcyI GRCGYC 1 cut(s) 287
AfiI CCNNNNNNNGG 4 cut(s) 65, 83, 252, 664
AgsI TTSAA 2 cut(s) 307, 1066
AjnI CCWGG 3 cut(s) 251, 576, 900
AjuI GAANNNNNNNTTGG 2 cut(s) 732, 764
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
AluBI AGCT 6 cut(s) 353, 618, 908, 942, 1118, 1153
AluI AGCT 6 cut(s) 353, 618, 908, 942, 1118, 1153
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 3 cut(s) 269, 434, 763
Alw44I GTGCAC 1 cut(s) 36
AlwI GGATC 4 cut(s) 588, 1049, 1113, 1134
AoxI GGCC 4 cut(s) 67, 433, 574, 1011
ApaLI GTGCAC 1 cut(s) 36
ApeKI GCWGC 4 cut(s) 23, 320, 334, 939
ApoI RAATTY 2 cut(s) 671, 881
AseI ATTAAT 1 cut(s) 1059
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 2 cut(s) 239, 437
AsuHPI GGTGA 4 cut(s) 215, 245, 491, 827
AxyI CCTNAGG 1 cut(s) 315
BaeGI GKGCMC 2 cut(s) 40, 90
BalI TGGCCA 1 cut(s) 1013
BanI GGYRCC 2 cut(s) 87, 695
BarI GAAGNNNNNNTAC 2 cut(s) 999, 1031
Bbv12I GWGCWC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 4 cut(s) 35, 307, 321, 951
BccI CCATC 3 cut(s) 224, 449, 1136
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 3 cut(s) 253, 578, 902
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 2 cut(s) 239, 437
BcoDI GTCTC 3 cut(s) 269, 434, 763
BfaI CTAG 2 cut(s) 20, 338
BfmI CTRYAG 1 cut(s) 793
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 467
BfuI GTATCC 1 cut(s) 649
BglI GCCNNNNNGGC 1 cut(s) 295
BglII AGATCT 2 cut(s) 121, 970
BisI GCNGC 4 cut(s) 24, 321, 335, 940
BlsI GCNGC 4 cut(s) 25, 322, 336, 941
Bme1390I CCNGG 5 cut(s) 239, 253, 437, 578, 902
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 4 cut(s) 89, 361, 697, 1147
BmrFI CCNGG 5 cut(s) 239, 253, 437, 578, 902
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 3 cut(s) 391, 478, 970
BmuI ACTGGG 1 cut(s) 417
BplI GAGNNNNNCTC 2 cut(s) 1092, 1124
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 979
BpuMI CCSGG 2 cut(s) 239, 437
BsaBI GATNNNNATC 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 193, 901, 1111
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 477, 507
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 83, 252, 664
Bse118I RCCGGY 2 cut(s) 65, 69
Bse1I ACTGG 3 cut(s) 412, 597, 1029
Bse21I CCTNAGG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 426
BseBI CCWGG 3 cut(s) 253, 578, 902
BseDI CCNNGG 3 cut(s) 193, 901, 1111
BseGI GGATG 4 cut(s) 222, 309, 460, 1147
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 4 cut(s) 65, 83, 252, 664
BseMII CTCAG 3 cut(s) 264, 306, 315
BseNI ACTGG 3 cut(s) 412, 597, 1029
BseRI GAGGAG 3 cut(s) 48, 363, 474
BseSI GKGCMC 2 cut(s) 40, 90
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 4 cut(s) 35, 307, 321, 951
BseYI CCCAGC 2 cut(s) 51, 839
Bsh1236I CGCG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 69, 435, 576, 1013
BshNI GGYRCC 2 cut(s) 87, 695
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 4 cut(s) 66, 70, 239, 437
BslI CCNNNNNNNGG 4 cut(s) 65, 83, 252, 664
BsmAI GTCTC 3 cut(s) 269, 434, 763
BsnI GGCC 4 cut(s) 69, 435, 576, 1013
Bso31I GGTCTC 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 40, 90
Bsp143I GATC 8 cut(s) 106, 121, 495, 580, 970, 1041, 1105, 1126
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 3 cut(s) 156, 226, 345
BspANI GGCC 4 cut(s) 69, 435, 576, 1013
BspCNI CTCAG 3 cut(s) 265, 307, 316
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 89, 361, 697, 1147
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 4 cut(s) 588, 1049, 1113, 1134
BspT107I GGYRCC 2 cut(s) 87, 695
BspTNI GGTCTC 1 cut(s) 269
BsrFI RCCGGY 2 cut(s) 65, 69
BsrI ACTGG 3 cut(s) 412, 597, 1029
BssAI RCCGGY 2 cut(s) 65, 69
BssECI CCNNGG 3 cut(s) 193, 901, 1111
BssMI GATC 8 cut(s) 106, 121, 495, 580, 970, 1041, 1105, 1126
BssNAI GTATAC 1 cut(s) 533
BssNI GRCGYC 1 cut(s) 287
BssT1I CCWWGG 2 cut(s) 193, 1111
Bst1107I GTATAC 1 cut(s) 533
Bst2UI CCWGG 3 cut(s) 253, 578, 902
Bst4CI ACNGT 3 cut(s) 695, 797, 824
BstACI GRCGYC 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 779
BstC8I GCNNGC 4 cut(s) 67, 184, 332, 784
BstDEI CTNAG 4 cut(s) 273, 315, 324, 1003
BstDSI CCRYGG 1 cut(s) 193
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 4 cut(s) 222, 309, 460, 1147
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 8 cut(s) 109, 124, 498, 583, 973, 1044, 1108, 1129
BstMAI GTCTC 3 cut(s) 269, 434, 763
BstMBI GATC 8 cut(s) 106, 121, 495, 580, 970, 1041, 1105, 1126
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 225, 295, 779
BstNI CCWGG 3 cut(s) 253, 578, 902
BstNSI RCATGY 2 cut(s) 334, 927
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 5 cut(s) 237, 251, 435, 576, 900
BstSFI CTRYAG 1 cut(s) 793
BstSLI GKGCMC 2 cut(s) 40, 90
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 35, 307, 321, 951
BstX2I RGATCY 4 cut(s) 121, 580, 970, 1105
BstXI CCANNNNNNTGG 2 cut(s) 149, 200
BstYI RGATCY 4 cut(s) 121, 580, 970, 1105
BstZ17I GTATAC 1 cut(s) 533
BstZI CGGCCG 1 cut(s) 67
Bsu36I CCTNAGG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 4 cut(s) 69, 435, 576, 1013
BtgI CCRYGG 1 cut(s) 193
BtgZI GCGATG 2 cut(s) 243, 432
BtsCI GGATG 4 cut(s) 222, 309, 460, 1147
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 4 cut(s) 205, 405, 505, 820
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 4 cut(s) 67, 184, 332, 784
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 2 cut(s) 65, 69
Cfr13I GGNCC 1 cut(s) 434
CseI GACGC 1 cut(s) 295
CviAII CATG 6 cut(s) 194, 331, 624, 648, 924, 1130
DdeI CTNAG 4 cut(s) 273, 315, 324, 1003
DpnI GATC 8 cut(s) 108, 123, 497, 582, 972, 1043, 1107, 1128
DpnII GATC 8 cut(s) 106, 121, 495, 580, 970, 1041, 1105, 1126
DraI TTTAAA 1 cut(s) 915
EaeI YGGCCR 2 cut(s) 67, 1011
EagI CGGCCG 1 cut(s) 67
EciI GGCGGA 1 cut(s) 360
EclXI CGGCCG 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 193, 1111
Eco31I GGTCTC 1 cut(s) 269
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 598, 759
Eco81I CCTNAGG 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 3 cut(s) 251, 576, 900
EcoT14I CCWWGG 2 cut(s) 193, 1111
ErhI CCWWGG 2 cut(s) 193, 1111
FaeI CATG 6 cut(s) 197, 334, 627, 651, 927, 1133
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 6 cut(s) 193, 330, 623, 647, 923, 1129
FbaI TGATCA 1 cut(s) 495
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 4 cut(s) 24, 321, 335, 940
FokI GGATG 4 cut(s) 209, 296, 467, 1154
Fsp4HI GCNGC 4 cut(s) 24, 321, 335, 940
FspBI CTAG 2 cut(s) 20, 338
GlaI GCGC 1 cut(s) 27
GluI GCNGC 4 cut(s) 24, 321, 335, 940
GsaI CCCAGC 2 cut(s) 55, 843
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 4 cut(s) 69, 435, 576, 1013
HapII CCGG 4 cut(s) 66, 70, 239, 437
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 6 cut(s) 197, 334, 627, 651, 927, 1133
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 1151
HinfI GANTC 3 cut(s) 464, 710, 756
HpaII CCGG 4 cut(s) 66, 70, 239, 437
HphI GGTGA 4 cut(s) 215, 245, 491, 827
Hpy166II GTNNAC 3 cut(s) 38, 533, 818
Hpy188I TCNGA 2 cut(s) 604, 715
Hpy188III TCNNGA 2 cut(s) 977, 1139
Hpy8I GTNNAC 3 cut(s) 38, 533, 818
HpyAV CCTTC 4 cut(s) 108, 652, 673, 1030
HpyCH4III ACNGT 3 cut(s) 695, 797, 824
HpyCH4V TGCA 9 cut(s) 38, 449, 653, 773, 782, 863, 923, 1073, 1133
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 295, 779
HpyF3I CTNAG 4 cut(s) 273, 315, 324, 1003
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 6 cut(s) 197, 334, 627, 651, 927, 1133
HspAI GCGC 1 cut(s) 26
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 8 cut(s) 106, 121, 495, 580, 970, 1041, 1105, 1126
LmnI GCTCC 4 cut(s) 350, 905, 1115, 1145
Lsp1109I GCAGC 4 cut(s) 35, 307, 321, 951
LweI GCATC 3 cut(s) 391, 478, 970
MaeI CTAG 2 cut(s) 20, 338
MaeIII GTNAC 5 cut(s) 233, 465, 479, 500, 988
MalI GATC 8 cut(s) 108, 123, 497, 582, 972, 1043, 1107, 1128
MboI GATC 8 cut(s) 106, 121, 495, 580, 970, 1041, 1105, 1126
MboII GAAGA 2 cut(s) 397, 965
MfeI CAATTG 2 cut(s) 267, 302
MflI RGATCY 4 cut(s) 121, 580, 970, 1105
MhlI GDGCHC 2 cut(s) 40, 90
MlsI TGGCCA 1 cut(s) 1013
MluCI AATT 7 cut(s) 174, 267, 302, 671, 747, 881, 1060
MluNI TGGCCA 1 cut(s) 1013
MlyI GAGTC 2 cut(s) 473, 765
MmeI TCCRAC 1 cut(s) 1078
Mox20I TGGCCA 1 cut(s) 1013
MroNI GCCGGC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 1013
MseI TTAA 5 cut(s) 173, 564, 914, 929, 1059
MslI CAYNNNNRTG 2 cut(s) 147, 198
Msp20I TGGCCA 1 cut(s) 1013
MspI CCGG 4 cut(s) 66, 70, 239, 437
MspR9I CCNGG 5 cut(s) 239, 253, 437, 578, 902
MunI CAATTG 2 cut(s) 267, 302
MvaI CCWGG 3 cut(s) 253, 578, 902
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 225, 295, 779
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 2 cut(s) 239, 437
NcoI CCATGG 1 cut(s) 193
NdeII GATC 8 cut(s) 106, 121, 495, 580, 970, 1041, 1105, 1126
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 6 cut(s) 197, 334, 627, 651, 927, 1133
NlaIV GGNNCC 4 cut(s) 89, 361, 697, 1147
NmeAIII GCCGAG 1 cut(s) 411
NmuCI GTSAC 4 cut(s) 233, 465, 479, 500
NspI RCATGY 2 cut(s) 334, 927
PaeI GCATGC 1 cut(s) 334
PaqCI CACCTGC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 710
PkrI GCNGC 4 cut(s) 25, 322, 336, 941
PleI GAGTC 2 cut(s) 472, 764
PpsI GAGTC 2 cut(s) 472, 764
PshBI ATTAAT 1 cut(s) 1059
Psp6I CCWGG 3 cut(s) 251, 576, 900
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 2 cut(s) 51, 839
PspGI CCWGG 3 cut(s) 251, 576, 900
PspN4I GGNNCC 4 cut(s) 89, 361, 697, 1147
PspPI GGNCC 1 cut(s) 434
PsuI RGATCY 4 cut(s) 121, 580, 970, 1105
RseI CAYNNNNRTG 2 cut(s) 147, 198
SaqAI TTAA 5 cut(s) 173, 564, 914, 929, 1059
SatI GCNGC 4 cut(s) 24, 321, 335, 940
Sau3AI GATC 8 cut(s) 106, 121, 495, 580, 970, 1041, 1105, 1126
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 2 cut(s) 473, 765
ScrFI CCNGG 5 cut(s) 239, 253, 437, 578, 902
SduI GDGCHC 2 cut(s) 40, 90
SfaNI GCATC 3 cut(s) 391, 478, 970
SfcI CTRYAG 1 cut(s) 793
SmiMI CAYNNNNRTG 2 cut(s) 147, 198
SmlI CTYRAG 1 cut(s) 958
SmoI CTYRAG 1 cut(s) 958
SphI GCATGC 1 cut(s) 334
Sse9I AATT 7 cut(s) 174, 267, 302, 671, 747, 881, 1060
SsiI CCGC 3 cut(s) 156, 226, 345
SspI AATATT 1 cut(s) 1057
SspMI CTAG 2 cut(s) 20, 338
StyD4I CCNGG 5 cut(s) 237, 251, 435, 576, 900
StyI CCWWGG 2 cut(s) 193, 1111
TaaI ACNGT 3 cut(s) 695, 797, 824
TaqI TCGA 2 cut(s) 556, 976
TasI AATT 7 cut(s) 174, 267, 302, 671, 747, 881, 1060
TfiI GAWTC 1 cut(s) 710
Tru1I TTAA 5 cut(s) 173, 564, 914, 929, 1059
Tru9I TTAA 5 cut(s) 173, 564, 914, 929, 1059
TscAI CASTG 4 cut(s) 205, 412, 505, 827
TseFI GTSAC 4 cut(s) 233, 465, 479, 500
TseI GCWGC 4 cut(s) 23, 320, 334, 939
Tsp45I GTSAC 4 cut(s) 233, 465, 479, 500
TspDTI ATGAA 4 cut(s) 17, 211, 416, 1049
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 4 cut(s) 205, 412, 505, 827
VneI GTGCAC 1 cut(s) 36
VspI ATTAAT 1 cut(s) 1059
XapI RAATTY 2 cut(s) 671, 881
XceI RCATGY 2 cut(s) 334, 927
XmiI GTMKAC 1 cut(s) 532
XspI CTAG 2 cut(s) 20, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.