Rmu_sc0010698.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010698.1
OG0004556
Physical Location & Seq
Forward (+)
51236 .. 51631
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010698.1_g000012.1.cds

Sequence Viewer

Length: 396 bp
atggctctctctctctctctctcgaaatggctctgcaactctgggatctcttttccttcttctttttgttgtcaccgatcaccacgcctctacaccgcctttcaccacctccgattacagcccctcacttcaacatccacaaccccttcagctgcctcgagggtcgatcttcactgtgcccaggctctcaatgagtccattccggcctcaattcaagccctccttcgtgtcgccaagatcaccggtagagcacccaacaagctctccaagatgtcagaccctaattctgtttgttttcgattttggtttctgtgtttttgtgaatcaggtgggattgatgtgttttgcagtaaggttgtgaggcttgggattgctcaggtgttgatagtgatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.35

Weight (kDa)

9.41

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 157
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 132
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 2 cut(s) 132, 215
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 152, 262
AluI AGCT 2 cut(s) 152, 262
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 152
AsiGI ACCGGT 1 cut(s) 242
AsuHPI GGTGA 4 cut(s) 65, 72, 95, 232
AvaI CYCGRG 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 182
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bse118I RCCGGY 1 cut(s) 242
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 389
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 203, 243
BsnI GGCC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 181, 253
Bsp143I GATC 4 cut(s) 45, 77, 166, 237
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 388
BspPI GGATC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 4 cut(s) 45, 77, 166, 237
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 4 cut(s) 48, 80, 169, 240
BstMBI GATC 4 cut(s) 45, 77, 166, 237
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 242
CviJI RGCY 9 cut(s) 5, 31, 121, 152, 185, 206, 218, 262, 364
CviKI_1 RGCY 9 cut(s) 5, 31, 121, 152, 185, 206, 218, 262, 364
DdeI CTNAG 1 cut(s) 375
DpnI GATC 4 cut(s) 47, 79, 168, 239
DpnII GATC 4 cut(s) 45, 77, 166, 237
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 180
FalI AAGNNNNNCTT 2 cut(s) 207, 239
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 206
HapII CCGG 2 cut(s) 203, 243
HinfI GANTC 2 cut(s) 194, 323
HpaII CCGG 2 cut(s) 203, 243
HphI GGTGA 4 cut(s) 65, 72, 95, 232
Hpy188I TCNGA 2 cut(s) 113, 277
Hpy188III TCNNGA 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 66, 156, 233
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 36, 348
HpyF3I CTNAG 1 cut(s) 375
Kzo9I GATC 4 cut(s) 45, 77, 166, 237
LpnPI CCDG 7 cut(s) 27, 167, 194, 216, 256, 312, 362
Lsp1109I GCAGC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 71
MalI GATC 4 cut(s) 47, 79, 168, 239
MboI GATC 4 cut(s) 45, 77, 166, 237
MboII GAAGA 2 cut(s) 51, 161
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 181, 253
MluCI AATT 2 cut(s) 210, 283
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 8 cut(s) 98, 119, 134, 153, 166, 217, 230, 354
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 203, 243
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
NdeII GATC 4 cut(s) 45, 77, 166, 237
NmuCI GTSAC 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 157
PfeI GAWTC 1 cut(s) 323
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspXI VCTCGAGB 1 cut(s) 157
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 152
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 4 cut(s) 45, 77, 166, 237
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 2 cut(s) 181, 253
SetI ASST 6 cut(s) 111, 154, 264, 331, 357, 381
Sfr274I CTCGAG 1 cut(s) 157
SlaI CTCGAG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 2 cut(s) 210, 283
SsiI CCGC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 4 cut(s) 23, 158, 165, 298
TasI AATT 2 cut(s) 210, 283
TfiI GAWTC 1 cut(s) 323
TscAI CASTG 1 cut(s) 179
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 71
TspRI CASTG 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.