Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Forward (+)

30929664 .. 30931682

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGACGATGTTGCCATGGTTTGCTTGTTCGGTGGGTGTGCTCGGTTGGGCAACATTGAGATTGGGCTGCATGGACATGGGTTGATGGTGAAGGTAGGGTTGATTTCTAGTGTCAAGTCGTGCAACGAGACTATGGAACAGATGCATCAGTCACTACGCGTAACTTGGGCTTCATTGCCAGAGCCTACACAAGTTAACTGTGCTTTTATTGGGGTTAATATACCTCCTTCATCTCCGATGACCTCCCTGTGGACATCCAGCGACCTCCGACGAGGGTCTCGCCTCCGGCGAAGATCTTGCAAACTCTGCTCCGGCCGGTTTCCAATCTCCGGGCATCTCTGCCCTTCCATTAATCTTCTTTTGCCAAATCTGATCCCTATTGTTGATGGTTATGGTGGTGCTCGTTCTGATGCCCTGGTGATTTGGGCTAGCGAAAGCCATGGTGGCGGTGAAAGGGTGAAACGCTTCACCCACGATGGTGACACGATTTCCTTGTTCGAGTTGCCTCTTCAAATGTCTAGGATAAGTGTGACGCTCATGTGGCTGCGATTCCCCGAGGTGGTTGGGGGTTCGCGACTATGGTACGACGGCGCAGTTGTCGATATACGACCGGGTTTTATTGAAGAAGATAGTGATGCAGTCGATGCCACTGGTTATGGCGGCGATGTGGATCTTGGGTCCTTGAGTTTTGATCTGTTTGAACCAGAAATCAATATGAAGGATGGAGGCGCATCACTACGTGCTGGCGGGGTGGAGCTGCTGATATCGGCGAAGCGGGCTGCTGGATGGCTGGTTGATCGACCGTTGGTGACTCCGATGGCAGGTATAGCATGCTGGTGGTTTCTTGGGCTCCTTGGGCCGTGGACTGCAACTACAGCTGTAACGTCCCGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

299

Amino Acids

32.2

Weight (kDa)

5.88

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	812
AccII	CGCG	2 cut(s)	159, 574
AciI	CCGC	4 cut(s)	447, 660, 747, 775
AclWI	GGATC	2 cut(s)	367, 678
AcoI	YGGCCR	1 cut(s)	313
AdeI	CACNNNGTG	1 cut(s)	740
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	4 cut(s)	249, 329, 559, 821
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	512, 623, 701
AjnI	CCWGG	1 cut(s)	414
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	2 cut(s)	757, 878
AluI	AGCT	2 cut(s)	757, 878
Alw21I	GWGCWC	2 cut(s)	43, 403
Alw26I	GTCTC	2 cut(s)	122, 282
AlwI	GGATC	2 cut(s)	367, 678
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	2 cut(s)	313, 857
ApeKI	GCWGC	4 cut(s)	67, 544, 757, 779
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	2 cut(s)	593, 731
AspS9I	GGNCC	2 cut(s)	678, 857
AsuC2I	CCSGG	2 cut(s)	331, 612
AsuHPI	GGTGA	7 cut(s)	100, 430, 460, 461, 469, 491, 820
AsuNHI	GCTAGC	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	852
Bbv12I	GWGCWC	2 cut(s)	43, 403
BbvI	GCAGC	4 cut(s)	54, 531, 744, 766
BccI	CCATC	6 cut(s)	79, 380, 470, 716, 780, 811
BceAI	ACGGC	2 cut(s)	604, 844
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	2 cut(s)	331, 612
BcoDI	GTCTC	2 cut(s)	122, 282
BfaI	CTAG	3 cut(s)	108, 429, 519
BfmI	CTRYAG	1 cut(s)	873
BfuAI	ACCTGC	1 cut(s)	812
BglI	GCCNNNNNGGC	1 cut(s)	444
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	5 cut(s)	68, 545, 661, 758, 780
BlsI	GCNGC	5 cut(s)	69, 546, 662, 759, 781
Bme1390I	CCNGG	3 cut(s)	331, 416, 612
Bme18I	GGWCC	1 cut(s)	678
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	678, 857
BmiI	GGNNCC	2 cut(s)	679, 851
BmrFI	CCNGG	3 cut(s)	331, 416, 612
BmsI	GCATC	7 cut(s)	132, 154, 343, 400, 625, 634, 740
BmtI	GCTAGC	1 cut(s)	432
BoxI	GACNNNNGTC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	2 cut(s)	331, 612
BsaAI	YACGTR	1 cut(s)	740
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	6 cut(s)	15, 414, 439, 555, 853, 860
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 329, 559, 821
Bse118I	RCCGGY	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	655
Bse3DI	GCAATG	1 cut(s)	173
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	6 cut(s)	15, 414, 439, 555, 853, 860
BseGI	GGATG	3 cut(s)	254, 727, 791
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	4 cut(s)	249, 329, 559, 821
BseMI	GCAATG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	655
BseX3I	CGGCCG	1 cut(s)	313
BseXI	GCAGC	4 cut(s)	54, 531, 744, 766
Bsh1236I	CGCG	2 cut(s)	159, 574
Bsh1285I	CGRYCG	3 cut(s)	316, 611, 803
BshFI	GGCC	2 cut(s)	315, 859
BsiEI	CGRYCG	3 cut(s)	316, 611, 803
BsiHKAI	GWGCWC	2 cut(s)	43, 403
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	5 cut(s)	286, 312, 316, 330, 611
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	4 cut(s)	249, 329, 559, 821
BsmAI	GTCTC	2 cut(s)	122, 282
BsmFI	GGGAC	1 cut(s)	871
BsnI	GGCC	2 cut(s)	315, 859
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	3 cut(s)	43, 403, 852
Bsp143I	GATC	5 cut(s)	293, 372, 670, 691, 796
Bsp19I	CCATGG	2 cut(s)	15, 439
Bsp68I	TCGCGA	1 cut(s)	574
BspACI	CCGC	4 cut(s)	447, 660, 747, 775
BspANI	GGCC	2 cut(s)	315, 859
BspFNI	CGCG	2 cut(s)	159, 574
BspLI	GGNNCC	2 cut(s)	679, 851
BspMI	ACCTGC	1 cut(s)	812
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	2 cut(s)	367, 678
BspTNI	GGTCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	655
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	6 cut(s)	15, 414, 439, 555, 853, 860
BssMI	GATC	5 cut(s)	293, 372, 670, 691, 796
BssT1I	CCWWGG	3 cut(s)	15, 439, 853
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	200, 804
Bst6I	CTCTTC	1 cut(s)	513
BstAPI	GCANNNNNTGC	2 cut(s)	306, 644
BstBAI	YACGTR	1 cut(s)	740
BstC8I	GCNNGC	4 cut(s)	430, 745, 777, 832
BstDSI	CCRYGG	3 cut(s)	15, 439, 860
BstF5I	GGATG	3 cut(s)	254, 727, 791
BstFNI	CGCG	2 cut(s)	159, 574
BstHHI	GCGC	2 cut(s)	593, 731
BstKTI	GATC	5 cut(s)	296, 375, 673, 694, 799
BstMAI	GTCTC	2 cut(s)	122, 282
BstMBI	GATC	5 cut(s)	293, 372, 670, 691, 796
BstMCI	CGRYCG	3 cut(s)	316, 611, 803
BstMWI	GCNNNNNNNGC	8 cut(s)	306, 444, 541, 644, 776, 827, 856, 875
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	834
BstPAI	GACNNNNGTC	1 cut(s)	274
BstSCI	CCNGG	3 cut(s)	329, 414, 610
BstSFI	CTRYAG	1 cut(s)	873
BstUI	CGCG	2 cut(s)	159, 574
BstV1I	GCAGC	4 cut(s)	54, 531, 744, 766
BstX2I	RGATCY	2 cut(s)	293, 670
BstYI	RGATCY	2 cut(s)	293, 670
BstZI	CGGCCG	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	315, 859
BtgI	CCRYGG	3 cut(s)	15, 439, 860
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	3 cut(s)	254, 727, 791
BtsIMutI	CAGTG	1 cut(s)	648
BtuMI	TCGCGA	1 cut(s)	574
BveI	ACCTGC	1 cut(s)	812
Cac8I	GCNNGC	4 cut(s)	430, 745, 777, 832
CfoI	GCGC	2 cut(s)	593, 731
Cfr10I	RCCGGY	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	678, 857
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	6 cut(s)	16, 71, 77, 440, 538, 831
CviQI	GTAC	1 cut(s)	583
DpnI	GATC	5 cut(s)	295, 374, 672, 693, 798
DpnII	GATC	5 cut(s)	293, 372, 670, 691, 796
DraIII	CACNNNGTG	1 cut(s)	740
EaeI	YGGCCR	1 cut(s)	313
EagI	CGGCCG	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
EclXI	CGGCCG	1 cut(s)	313
Eco130I	CCWWGG	3 cut(s)	15, 439, 853
Eco24I	GRGCYC	1 cut(s)	852
Eco31I	GGTCTC	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	678
Eco52I	CGGCCG	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	765
EcoT14I	CCWWGG	3 cut(s)	15, 439, 853
EcoT22I	ATGCAT	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	852
ErhI	CCWWGG	3 cut(s)	15, 439, 853
FaeI	CATG	6 cut(s)	19, 74, 80, 443, 541, 834
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	6 cut(s)	15, 70, 76, 439, 537, 830
FauI	CCCGC	2 cut(s)	740, 768
Fnu4HI	GCNGC	5 cut(s)	68, 545, 661, 758, 780
FokI	GGATG	3 cut(s)	241, 734, 798
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	5 cut(s)	68, 545, 661, 758, 780
FspBI	CTAG	3 cut(s)	108, 429, 519
GlaI	GCGC	2 cut(s)	592, 730
GluI	GCNGC	5 cut(s)	68, 545, 661, 758, 780
HaeIII	GGCC	2 cut(s)	315, 859
HapII	CCGG	5 cut(s)	286, 312, 316, 330, 611
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	2 cut(s)	593, 731
Hin1II	CATG	6 cut(s)	19, 74, 80, 443, 541, 834
Hin6I	GCGC	2 cut(s)	591, 729
HinP1I	GCGC	2 cut(s)	591, 729
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	549, 811
HpaI	GTTAAC	1 cut(s)	196
HpaII	CCGG	5 cut(s)	286, 312, 316, 330, 611
HphI	GGTGA	7 cut(s)	100, 430, 460, 461, 469, 491, 820
Hpy166II	GTNNAC	3 cut(s)	196, 252, 864
Hpy188I	TCNGA	5 cut(s)	237, 269, 372, 409, 816
Hpy188III	TCNNGA	2 cut(s)	573, 888
Hpy8I	GTNNAC	3 cut(s)	196, 252, 864
Hpy99I	CGWCG	2 cut(s)	273, 590
HpyAV	CCTTC	4 cut(s)	85, 237, 354, 712
HpyCH4III	ACNGT	2 cut(s)	200, 804
HpyCH4IV	ACGT	2 cut(s)	739, 884
HpyCH4V	TGCA	6 cut(s)	70, 123, 145, 300, 638, 869
HpyF10VI	GCNNNNNNNGC	8 cut(s)	306, 444, 541, 644, 776, 827, 856, 875
HpySE526I	ACGT	2 cut(s)	739, 884
Hsp92II	CATG	6 cut(s)	19, 74, 80, 443, 541, 834
HspAI	GCGC	2 cut(s)	591, 729
KspAI	GTTAAC	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	293, 372, 670, 691, 796
LmnI	GCTCC	3 cut(s)	314, 754, 855
Lsp1109I	GCAGC	4 cut(s)	54, 531, 744, 766
LweI	GCATC	7 cut(s)	132, 154, 343, 400, 625, 634, 740
MaeI	CTAG	3 cut(s)	108, 429, 519
MaeII	ACGT	2 cut(s)	739, 884
MaeIII	GTNAC	6 cut(s)	150, 160, 479, 529, 808, 880
MalI	GATC	5 cut(s)	295, 374, 672, 693, 798
MboI	GATC	5 cut(s)	293, 372, 670, 691, 796
MboII	GAAGA	5 cut(s)	303, 347, 500, 635, 638
MflI	RGATCY	2 cut(s)	293, 670
MhlI	GDGCHC	3 cut(s)	43, 403, 852
MluI	ACGCGT	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	8 cut(s)	234, 253, 266, 275, 293, 516, 550, 719
Mph1103I	ATGCAT	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	3 cut(s)	195, 216, 351
MslI	CAYNNNNRTG	3 cut(s)	75, 477, 835
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	5 cut(s)	286, 312, 316, 330, 611
MspR9I	CCNGG	3 cut(s)	331, 416, 612
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	2 cut(s)	159, 574
MwoI	GCNNNNNNNGC	8 cut(s)	306, 444, 541, 644, 776, 827, 856, 875
NciI	CCSGG	2 cut(s)	331, 612
NcoI	CCATGG	2 cut(s)	15, 439
NdeII	GATC	5 cut(s)	293, 372, 670, 691, 796
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	6 cut(s)	19, 74, 80, 443, 541, 834
NlaIV	GGNNCC	2 cut(s)	679, 851
NmuCI	GTSAC	4 cut(s)	150, 479, 529, 808
NruI	TCGCGA	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	147
NspI	RCATGY	1 cut(s)	834
OliI	CACNNNNGTG	1 cut(s)	477
PaeI	GCATGC	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	549
PkrI	GCNGC	5 cut(s)	69, 546, 662, 759, 781
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
Ppu21I	YACGTR	1 cut(s)	740
PpuMI	RGGWCCY	1 cut(s)	678
PshAI	GACNNNNGTC	1 cut(s)	274
PshBI	ATTAAT	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	679, 851
PspPI	GGNCC	2 cut(s)	678, 857
PspPPI	RGGWCCY	1 cut(s)	678
PsuI	RGATCY	2 cut(s)	293, 670
PvuII	CAGCTG	1 cut(s)	878
RruI	TCGCGA	1 cut(s)	574
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
RseI	CAYNNNNRTG	3 cut(s)	75, 477, 835
SaqAI	TTAA	3 cut(s)	195, 216, 351
SatI	GCNGC	5 cut(s)	68, 545, 661, 758, 780
Sau3AI	GATC	5 cut(s)	293, 372, 670, 691, 796
Sau96I	GGNCC	2 cut(s)	678, 857
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	3 cut(s)	331, 416, 612
SduI	GDGCHC	3 cut(s)	43, 403, 852
SfaNI	GCATC	7 cut(s)	132, 154, 343, 400, 625, 634, 740
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	3 cut(s)	75, 477, 835
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
SphI	GCATGC	1 cut(s)	834
SsiI	CCGC	4 cut(s)	447, 660, 747, 775
SspMI	CTAG	3 cut(s)	108, 429, 519
StyD4I	CCNGG	3 cut(s)	329, 414, 610
StyI	CCWWGG	3 cut(s)	15, 439, 853
TaaI	ACNGT	2 cut(s)	200, 804
TaiI	ACGT	2 cut(s)	742, 887
TaqI	TCGA	4 cut(s)	498, 600, 642, 799
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	1 cut(s)	549
Tru1I	TTAA	3 cut(s)	195, 216, 351
Tru9I	TTAA	3 cut(s)	195, 216, 351
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	4 cut(s)	150, 479, 529, 808
TseI	GCWGC	4 cut(s)	67, 544, 757, 779
Tsp45I	GTSAC	4 cut(s)	150, 479, 529, 808
TspDTI	ATGAA	3 cut(s)	162, 219, 731
TspRI	CASTG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	678
VspI	ATTAAT	1 cut(s)	351
XceI	RCATGY	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	3 cut(s)	108, 429, 519
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.