Rh2BG005500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004556
Physical Location & Seq
Reverse (-)
422531 .. 423391
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG005500.1

Sequence Viewer

Length: 861 bp
ATGAAAACCCTATTCTCTCTATTCTCTCTAGCAGCGCCTCCCCTTGCGCTCACTCAGACCCATCCTCCTCTTGATGGCGAGGCGCTTAGCGGCTCCGGCTGGTCTCCAATATCAGGGCACCTCTGCCCTTTCATTGCTCTATCTTTGTCGGATCTGACTGCCACTTTTGACGATTATTATGGCGTCGGTCTTGTAGCCCTATTCATTCGGGCGGGCAAAAGCCATGGCGGTGGTCATAGGGTGGAACGCTTCATCCACGATGGAGACCCAGTTTCCTCGTCCTGGTTGCCTCCTACAATTGCTGGGACCGGTGTGACACCTATGTGGCTGCGATTGAACATCCCTGAGGCTACTGAGGGCGGGCTGCTAGTAGGCGGAGAAGCCAGCAGAACCTTTTGGCTGCTATGGAGTGAGGAGATATGCTTTGCCAATGCCACTGGGTATGGAGGCGATATTGATCTTGGGTCATTGGGGTTTCATCTATTCGGACAGGAGACCAAAGCAAAGGGTGGAGGAGTGTTGCTGCCGGCGAAGCTGGATGCTGGTGGCGGAATTTCATGGGCTTGGGCTCTGGTGCATAATTGGCTCTGGGTGTCCAGATCTGTCTGGCAGGCAGTCTGCAGCTTTTGGGCTCCTATCTGTGCCCACCTCTCGATGGCTTTGACGGCGGAGACTATGTCAGTGTTCATACCATGGCTGGTTGAATGGCCGTCGGCAATTCTGGTGGCAGGGGAAGCATGCTGGTGGGTCCTTGGGCTTCTTGGGCCGCTGGTTGAGACTGCAGCTCTGCACTCAAGTTTTGGGCCAGGATCTCTTGGGTCCAAAATGAGTATTGGGTCTTTGTACCCATTTTTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

30.39

Weight (kDa)

5.36

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 117
AciI CCGC 8 cut(s) 90, 212, 228, 360, 375, 549, 668, 767
AclWI GGATC 2 cut(s) 159, 817
AcoI YGGCCR 1 cut(s) 707
AcsI RAATTY 1 cut(s) 552
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 4 cut(s) 74, 113, 282, 655
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 2 cut(s) 337, 704
AjnI CCWGG 2 cut(s) 281, 805
AleI CACNNNNGTG 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 3 cut(s) 535, 624, 785
AluI AGCT 3 cut(s) 535, 624, 785
Alw26I GTCTC 5 cut(s) 108, 258, 488, 665, 770
AlwI GGATC 2 cut(s) 159, 817
AoxI GGCC 3 cut(s) 707, 764, 803
ApeKI GCWGC 7 cut(s) 32, 328, 364, 400, 523, 621, 782
ApoI RAATTY 1 cut(s) 552
AsiGI ACCGGT 1 cut(s) 308
AspLEI GCGC 3 cut(s) 37, 49, 85
AspS9I GGNCC 5 cut(s) 306, 748, 764, 803, 819
AvaII GGWCC 3 cut(s) 306, 748, 819
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 2 cut(s) 120, 646
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 2 cut(s) 571, 634
BbvI GCAGC 7 cut(s) 44, 315, 351, 387, 510, 633, 794
BccI CCATC 4 cut(s) 68, 69, 254, 649
BceAI ACGGC 2 cut(s) 681, 694
BciT130I CCWGG 2 cut(s) 283, 807
BcoDI GTCTC 5 cut(s) 108, 258, 488, 665, 770
BfaI CTAG 2 cut(s) 29, 368
BfmI CTRYAG 2 cut(s) 619, 780
BfoI RGCGCY 2 cut(s) 38, 86
BglII AGATCT 1 cut(s) 599
BisI GCNGC 9 cut(s) 33, 91, 329, 365, 401, 524, 622, 767, 783
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 9 cut(s) 34, 92, 330, 366, 402, 525, 623, 768, 784
Bme1390I CCNGG 2 cut(s) 283, 807
Bme18I GGWCC 3 cut(s) 306, 748, 819
BmgT120I GGNCC 5 cut(s) 306, 748, 764, 803, 819
BmiI GGNNCC 6 cut(s) 94, 119, 307, 633, 749, 820
BmrFI CCNGG 2 cut(s) 283, 807
BmrI ACTGGG 2 cut(s) 263, 447
BmsI GCATC 1 cut(s) 529
BmuI ACTGGG 2 cut(s) 263, 447
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 778
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 3 cut(s) 108, 258, 488
BsaJI CCNNGG 3 cut(s) 223, 692, 751
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 6 cut(s) 49, 79, 255, 285, 662, 692
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 113, 282, 655
Bse118I RCCGGY 2 cut(s) 308, 526
Bse1I ACTGG 2 cut(s) 269, 442
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 283, 807
BseDI CCNNGG 3 cut(s) 223, 692, 751
BseGI GGATG 4 cut(s) 61, 252, 339, 544
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 4 cut(s) 74, 113, 282, 655
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 68, 336, 345
BseNI ACTGG 2 cut(s) 269, 442
BseRI GAGGAG 3 cut(s) 57, 428, 528
BseSI GKGCMC 2 cut(s) 120, 646
BseXI GCAGC 7 cut(s) 44, 315, 351, 387, 510, 633, 794
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 773
BshFI GGCC 3 cut(s) 709, 766, 805
BshNI GGYRCC 1 cut(s) 117
BshTI ACCGGT 1 cut(s) 308
BsiSI CCGG 3 cut(s) 96, 309, 527
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 4 cut(s) 74, 113, 282, 655
BsmAI GTCTC 5 cut(s) 108, 258, 488, 665, 770
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 3 cut(s) 709, 766, 805
Bso31I GGTCTC 3 cut(s) 108, 258, 488
Bsp1286I GDGCHC 4 cut(s) 120, 571, 634, 646
Bsp143I GATC 4 cut(s) 151, 457, 599, 809
Bsp1720I GCTNAGC 1 cut(s) 86
Bsp19I CCATGG 2 cut(s) 223, 692
BspACI CCGC 8 cut(s) 90, 212, 228, 360, 375, 549, 668, 767
BspANI GGCC 3 cut(s) 709, 766, 805
BspCNI CTCAG 3 cut(s) 67, 337, 346
BspLI GGNNCC 6 cut(s) 94, 119, 307, 633, 749, 820
BspMAI CTGCAG 2 cut(s) 623, 784
BspPI GGATC 2 cut(s) 159, 817
BspT107I GGYRCC 1 cut(s) 117
BspTNI GGTCTC 3 cut(s) 108, 258, 488
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 2 cut(s) 308, 526
BsrI ACTGG 2 cut(s) 269, 442
BssAI RCCGGY 2 cut(s) 308, 526
BssECI CCNNGG 3 cut(s) 223, 692, 751
BssMI GATC 4 cut(s) 151, 457, 599, 809
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 3 cut(s) 223, 692, 751
Bst2UI CCWGG 2 cut(s) 283, 807
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 6 cut(s) 214, 362, 385, 528, 612, 739
BstDEI CTNAG 4 cut(s) 54, 86, 345, 354
BstDSI CCRYGG 2 cut(s) 223, 692
BstF5I GGATG 4 cut(s) 61, 252, 339, 544
BstH2I RGCGCY 2 cut(s) 38, 86
BstHHI GCGC 3 cut(s) 37, 49, 85
BstKTI GATC 4 cut(s) 154, 460, 602, 812
BstMAI GTCTC 5 cut(s) 108, 258, 488, 665, 770
BstMBI GATC 4 cut(s) 151, 457, 599, 809
BstMWI GCNNNNNNNGC 6 cut(s) 96, 532, 583, 665, 734, 763
BstNI CCWGG 2 cut(s) 283, 807
BstNSI RCATGY 1 cut(s) 741
BstSCI CCNGG 2 cut(s) 281, 805
BstSFI CTRYAG 2 cut(s) 619, 780
BstSLI GKGCMC 2 cut(s) 120, 646
BstV1I GCAGC 7 cut(s) 44, 315, 351, 387, 510, 633, 794
BstX2I RGATCY 3 cut(s) 151, 599, 809
BstXI CCANNNNNNTGG 1 cut(s) 230
BstYI RGATCY 3 cut(s) 151, 599, 809
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 3 cut(s) 709, 766, 805
BtgI CCRYGG 2 cut(s) 223, 692
BtsCI GGATG 4 cut(s) 61, 252, 339, 544
BtsIMutI CAGTG 2 cut(s) 435, 687
Cac8I GCNNGC 6 cut(s) 214, 362, 385, 528, 612, 739
CfoI GCGC 3 cut(s) 37, 49, 85
Cfr10I RCCGGY 2 cut(s) 308, 526
Cfr13I GGNCC 5 cut(s) 306, 748, 764, 803, 819
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 844
CspAI ACCGGT 1 cut(s) 308
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 4 cut(s) 224, 558, 693, 738
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 4 cut(s) 54, 86, 345, 354
DpnI GATC 4 cut(s) 153, 459, 601, 811
DpnII GATC 4 cut(s) 151, 457, 599, 809
DraI TTTAAA 1 cut(s) 855
EaeI YGGCCR 1 cut(s) 707
EciI GGCGGA 3 cut(s) 390, 564, 683
Eco130I CCWWGG 3 cut(s) 223, 692, 751
Eco24I GRGCYC 2 cut(s) 571, 634
Eco31I GGTCTC 3 cut(s) 108, 258, 488
Eco47I GGWCC 3 cut(s) 306, 748, 819
Eco81I CCTNAGG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 748
EcoRII CCWGG 2 cut(s) 281, 805
EcoT14I CCWWGG 3 cut(s) 223, 692, 751
EcoT38I GRGCYC 2 cut(s) 571, 634
ErhI CCWWGG 3 cut(s) 223, 692, 751
FaeI CATG 4 cut(s) 227, 561, 696, 741
FaqI GGGAC 1 cut(s) 319
FatI CATG 4 cut(s) 223, 557, 692, 737
FauI CCCGC 2 cut(s) 205, 353
Fnu4HI GCNGC 9 cut(s) 33, 91, 329, 365, 401, 524, 622, 767, 783
FokI GGATG 4 cut(s) 48, 239, 326, 551
FriOI GRGCYC 2 cut(s) 571, 634
Fsp4HI GCNGC 9 cut(s) 33, 91, 329, 365, 401, 524, 622, 767, 783
FspBI CTAG 2 cut(s) 29, 368
GlaI GCGC 3 cut(s) 36, 48, 84
GluI GCNGC 9 cut(s) 33, 91, 329, 365, 401, 524, 622, 767, 783
GsaI CCCAGC 1 cut(s) 306
HaeII RGCGCY 2 cut(s) 38, 86
HaeIII GGCC 3 cut(s) 709, 766, 805
HapII CCGG 3 cut(s) 96, 309, 527
HgaI GACGC 1 cut(s) 172
HhaI GCGC 3 cut(s) 37, 49, 85
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 4 cut(s) 227, 561, 696, 741
Hin6I GCGC 3 cut(s) 35, 47, 83
HinP1I GCGC 3 cut(s) 35, 47, 83
HpaII CCGG 3 cut(s) 96, 309, 527
Hpy188I TCNGA 4 cut(s) 57, 151, 156, 488
Hpy188III TCNNGA 3 cut(s) 71, 597, 652
Hpy99I CGWCG 2 cut(s) 188, 715
HpyCH4V TGCA 4 cut(s) 577, 621, 782, 790
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 532, 583, 665, 734, 763
HpyF3I CTNAG 4 cut(s) 54, 86, 345, 354
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 4 cut(s) 227, 561, 696, 741
HspAI GCGC 3 cut(s) 35, 47, 83
KroI GCCGGC 1 cut(s) 526
KroNI GCCGGC 1 cut(s) 528
Kzo9I GATC 4 cut(s) 151, 457, 599, 809
LmnI GCTCC 2 cut(s) 98, 637
Lsp1109I GCAGC 7 cut(s) 44, 315, 351, 387, 510, 633, 794
LweI GCATC 1 cut(s) 529
MaeI CTAG 2 cut(s) 29, 368
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 153, 459, 601, 811
MboI GATC 4 cut(s) 151, 457, 599, 809
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 3 cut(s) 151, 599, 809
MhlI GDGCHC 4 cut(s) 120, 571, 634, 646
MluCI AATT 5 cut(s) 297, 552, 580, 717, 856
MmeI TCCRAC 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 526
MseI TTAA 1 cut(s) 854
MslI CAYNNNNRTG 3 cut(s) 228, 322, 742
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 3 cut(s) 96, 309, 527
MspR9I CCNGG 2 cut(s) 283, 807
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 2 cut(s) 283, 807
MwoI GCNNNNNNNGC 6 cut(s) 96, 532, 583, 665, 734, 763
NaeI GCCGGC 1 cut(s) 528
NcoI CCATGG 2 cut(s) 223, 692
NdeII GATC 4 cut(s) 151, 457, 599, 809
NgoMIV GCCGGC 1 cut(s) 526
NlaIII CATG 4 cut(s) 227, 561, 696, 741
NlaIV GGNNCC 6 cut(s) 94, 119, 307, 633, 749, 820
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 741
OliI CACNNNNGTG 1 cut(s) 322
PaeI GCATGC 1 cut(s) 741
PdiI GCCGGC 1 cut(s) 528
PflFI GACNNNGTC 1 cut(s) 676
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 9 cut(s) 34, 92, 330, 366, 402, 525, 623, 768, 784
PpuMI RGGWCCY 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 748
Psp6I CCWGG 2 cut(s) 281, 805
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 281, 805
PspN4I GGNNCC 6 cut(s) 94, 119, 307, 633, 749, 820
PspPI GGNCC 5 cut(s) 306, 748, 764, 803, 819
PspPPI RGGWCCY 1 cut(s) 748
PstI CTGCAG 2 cut(s) 623, 784
PsuI RGATCY 3 cut(s) 151, 599, 809
PsyI GACNNNGTC 1 cut(s) 676
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
RseI CAYNNNNRTG 3 cut(s) 228, 322, 742
SaqAI TTAA 1 cut(s) 854
SatI GCNGC 9 cut(s) 33, 91, 329, 365, 401, 524, 622, 767, 783
Sau3AI GATC 4 cut(s) 151, 457, 599, 809
Sau96I GGNCC 5 cut(s) 306, 748, 764, 803, 819
ScrFI CCNGG 2 cut(s) 283, 807
SduI GDGCHC 4 cut(s) 120, 571, 634, 646
SetI ASST 7 cut(s) 123, 322, 395, 537, 626, 651, 787
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 2 cut(s) 619, 780
SinI GGWCC 3 cut(s) 306, 748, 819
SmiMI CAYNNNNRTG 3 cut(s) 228, 322, 742
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
SphI GCATGC 1 cut(s) 741
Sse9I AATT 5 cut(s) 297, 552, 580, 717, 856
SsiI CCGC 8 cut(s) 90, 212, 228, 360, 375, 549, 668, 767
SspMI CTAG 2 cut(s) 29, 368
StyD4I CCNGG 2 cut(s) 281, 805
StyI CCWWGG 3 cut(s) 223, 692, 751
TaqI TCGA 1 cut(s) 653
TaqII GACCGA 1 cut(s) 176
TasI AATT 5 cut(s) 297, 552, 580, 717, 856
TauI GCSGC 2 cut(s) 93, 769
Tru1I TTAA 1 cut(s) 854
Tru9I TTAA 1 cut(s) 854
TscAI CASTG 2 cut(s) 442, 687
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 7 cut(s) 32, 328, 364, 400, 523, 621, 782
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 7 cut(s) 17, 121, 193, 241, 467, 546, 676
TspRI CASTG 2 cut(s) 442, 687
Tth111I GACNNNGTC 1 cut(s) 676
VpaK11BI GGWCC 3 cut(s) 306, 748, 819
XapI RAATTY 1 cut(s) 552
XceI RCATGY 1 cut(s) 741
XspI CTAG 2 cut(s) 29, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.