Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Reverse (-)

72239622 .. 72242444

Gene Structure 2823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATGGCGTGCTCGTAGTTTTGGCAGATTTGTCTCAGAGGCGGTCTGGGGCGGTGTCTCTACGTTTCGGGGGTGCGGTGGCATCTTCGTTTTGGGGGTTAGCTGCTGTGAATCTGGGGTCGAGGACGGAAATGGAGGCTCTCGATGAATCTGCATCGATATGGTGTTTGCGTCATCTCAGAAAGTGGCGTCTCGGGTTTGCTCAGGTTTCAGATCACCACGCCTCTGCACATACCGCCTTTCACCACCCCCGATTACAGCCCCTCACCTTAATATCCACAACCCCTTCAGCCGCCTCGAGCGCCGATCTTCACTATGCCCAGGCTCTCAGTGGGTTTGATGTGTTTTGCAGTAAGGTTATGAGGCTTGGGATTGCTCAGGTGTTGACAGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.23

Weight (kDa)

8.84

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	43, 53, 77, 237, 294
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	3 cut(s)	39, 63, 197
Ama87I	CYCGRG	2 cut(s)	194, 298
ApeKI	GCWGC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	305
AsuHPI	GGTGA	3 cut(s)	209, 236, 259
AvaI	CYCGRG	2 cut(s)	194, 298
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	39, 63, 197
BfaI	CTAG	1 cut(s)	397
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	2 cut(s)	105, 294
BlsI	GCNGC	2 cut(s)	106, 295
Bme1390I	CCNGG	1 cut(s)	323
BmeT110I	CYCGRG	2 cut(s)	194, 298
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	92, 164
Bpu10I	CCTNAGC	2 cut(s)	204, 378
Bsa29I	ATCGAT	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	5 cut(s)	50, 193, 218, 343, 392
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	2 cut(s)	194, 298
BsmAI	GTCTC	3 cut(s)	39, 63, 197
BsmBI	CGTCTC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	194, 298
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	214, 307, 393
BspACI	CCGC	5 cut(s)	43, 53, 77, 237, 294
BspCNI	CTCAG	5 cut(s)	49, 192, 217, 342, 391
BspDI	ATCGAT	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	3 cut(s)	214, 307, 393
BssNI	GRCGYC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	5 cut(s)	36, 179, 204, 329, 378
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	217, 310, 396
BstMAI	GTCTC	3 cut(s)	39, 63, 197
BstMBI	GATC	3 cut(s)	214, 307, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 302
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	158
BsuTUI	ATCGAT	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	337, 396
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	158
CseI	GACGC	2 cut(s)	161, 179
CviJI	RGCY	6 cut(s)	104, 140, 262, 293, 326, 367
CviKI_1	RGCY	6 cut(s)	104, 140, 262, 293, 326, 367
DdeI	CTNAG	5 cut(s)	36, 179, 204, 329, 378
DpnI	GATC	3 cut(s)	216, 309, 395
DpnII	GATC	3 cut(s)	214, 307, 393
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	2 cut(s)	194, 298
EcoRII	CCWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	197
FaiI	YATR	4 cut(s)	163, 234, 318, 362
Fnu4HI	GCNGC	2 cut(s)	105, 294
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	105, 294
FspBI	CTAG	1 cut(s)	397
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	2 cut(s)	105, 294
HaeII	RGCGCY	1 cut(s)	306
HgaI	GACGC	2 cut(s)	161, 179
HhaI	GCGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	2 cut(s)	112, 149
HphI	GGTGA	3 cut(s)	209, 236, 259
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	3 cut(s)	39, 182, 214
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	155, 230, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 302
HpyF3I	CTNAG	5 cut(s)	36, 179, 204, 329, 378
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	190
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	214, 307, 393
LpnPI	CCDG	6 cut(s)	33, 101, 191, 308, 335, 365
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	2 cut(s)	92, 164
MaeI	CTAG	1 cut(s)	397
MaeII	ACGT	1 cut(s)	64
MalI	GATC	3 cut(s)	216, 309, 395
MboI	GATC	3 cut(s)	214, 307, 393
MboII	GAAGA	2 cut(s)	78, 302
MhlI	GDGCHC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	33, 117, 130, 235, 275, 307, 357
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	236, 302
NdeII	GATC	3 cut(s)	214, 307, 393
PaeR7I	CTCGAG	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	112, 149
PkrI	GCNGC	2 cut(s)	106, 295
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspXI	VCTCGAGB	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	2 cut(s)	105, 294
Sau3AI	GATC	3 cut(s)	214, 307, 393
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	6 cut(s)	67, 106, 210, 272, 360, 384
SfaNI	GCATC	2 cut(s)	92, 164
Sfr274I	CTCGAG	1 cut(s)	298
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SsiI	CCGC	5 cut(s)	43, 53, 77, 237, 294
SspMI	CTAG	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	4 cut(s)	122, 144, 158, 299
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	2 cut(s)	112, 149
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	2 cut(s)	337, 396
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	2 cut(s)	337, 396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	298
XspI	CTAG	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.