Rh7CG500700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004556
Physical Location & Seq
Forward (+)
67659839 .. 67661038
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG500700.1

Sequence Viewer

Length: 387 bp
ATGGAAAAAACCATGAAAACCCTATTCTCCCTAACGGCGCCTCCCTTTGCGCTAACCCTAACCCCGCCTCCTCTTGCCGGCGAGGGCCATAGCGGCTCCGGCCAGTATCCTGTCTCCGGGCGTCTCTGCCCTCCTTTTAATCTGTTTTTGCCGAATCTGATCCCTATTGTTGATGGTCATTATGGCGGGGCTGCTGAGGCCCTGGTGCTTTGGGGTAGCGAAAGCCATGGCGGCGAAAGGGTCGAATGCTTCATCTATGATGGTGACCCGGTTTCCTTGTCCGGGTTGCCTTTTCCAATGGCTGAGCAAGGTGCGACGCTCATGTGGCTGGAATTTCCCGATGCTGATGGGGGTTCGCGAATATCGTTCGATGGCGTCGCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.47

Weight (kDa)

4.42

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccII CGCG 1 cut(s) 358
AciI CCGC 4 cut(s) 65, 93, 186, 231
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 332
AcyI GRCGYC 3 cut(s) 38, 121, 375
AfiI CCNNNNNNNGG 3 cut(s) 77, 116, 282
AjnI CCWGG 1 cut(s) 201
Alw26I GTCTC 2 cut(s) 118, 128
AlwI GGATC 1 cut(s) 154
AoxI GGCC 3 cut(s) 85, 100, 198
ApeKI GCWGC 2 cut(s) 191, 380
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 2 cut(s) 40, 52
AspS9I GGNCC 2 cut(s) 85, 199
AsuC2I CCSGG 3 cut(s) 118, 269, 283
AsuHPI GGTGA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 178
BccI CCATC 4 cut(s) 167, 254, 341, 365
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 203
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 3 cut(s) 118, 269, 283
BcoDI GTCTC 2 cut(s) 118, 128
BfoI RGCGCY 1 cut(s) 41
BfuI GTATCC 1 cut(s) 117
BglI GCCNNNNNGGC 2 cut(s) 93, 231
BisI GCNGC 4 cut(s) 94, 192, 232, 381
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 4 cut(s) 95, 193, 233, 382
Bme1390I CCNGG 4 cut(s) 118, 203, 269, 283
BmgT120I GGNCC 2 cut(s) 85, 199
BmiI GGNNCC 2 cut(s) 39, 97
BmrFI CCNGG 4 cut(s) 118, 203, 269, 283
BmsI GCATC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 303
BpuMI CCSGG 3 cut(s) 118, 269, 283
BsaHI GRCGYC 3 cut(s) 38, 121, 375
BsaJI CCNNGG 2 cut(s) 201, 226
BsaXI ACNNNNNCTCC 4 cut(s) 25, 52, 55, 82
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 116, 282
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 201, 226
BseLI CCNNNNNNNGG 3 cut(s) 77, 116, 282
BseMII CTCAG 2 cut(s) 186, 294
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 3 cut(s) 87, 102, 200
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 5 cut(s) 78, 99, 117, 269, 282
BslI CCNNNNNNNGG 3 cut(s) 77, 116, 282
BsmAI GTCTC 2 cut(s) 118, 128
BsmBI CGTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 3 cut(s) 87, 102, 200
Bsp143I GATC 1 cut(s) 159
Bsp1720I GCTNAGC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 226
Bsp68I TCGCGA 1 cut(s) 358
BspACI CCGC 4 cut(s) 65, 93, 186, 231
BspANI GGCC 3 cut(s) 87, 102, 200
BspCNI CTCAG 2 cut(s) 187, 295
BspFNI CGCG 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 39, 97
BspPI GGATC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 201, 226
BssMI GATC 1 cut(s) 159
BssNI GRCGYC 3 cut(s) 38, 121, 375
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 203
BstACI GRCGYC 3 cut(s) 38, 121, 375
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 195, 303
BstDSI CCRYGG 1 cut(s) 226
BstEII GGTNACC 1 cut(s) 263
BstFNI CGCG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 2 cut(s) 40, 52
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 2 cut(s) 118, 128
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 5 cut(s) 93, 99, 197, 231, 325
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 4 cut(s) 116, 201, 267, 281
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 178
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 3 cut(s) 87, 102, 200
BtgI CCRYGG 1 cut(s) 226
BtuMI TCGCGA 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 2 cut(s) 40, 52
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 85, 199
CseI GACGC 3 cut(s) 110, 325, 364
CviAII CATG 3 cut(s) 13, 227, 322
CviJI RGCY 9 cut(s) 87, 96, 102, 191, 200, 225, 302, 328, 383
CviKI_1 RGCY 9 cut(s) 87, 96, 102, 191, 200, 225, 302, 328, 383
DdeI CTNAG 2 cut(s) 195, 303
DinI GGCGCC 1 cut(s) 39
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 226
Eco91I GGTNACC 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 226
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 16, 230, 325
FaiI YATR 6 cut(s) 14, 90, 183, 228, 258, 323
FatI CATG 3 cut(s) 12, 226, 321
FauI CCCGC 2 cut(s) 72, 179
Fnu4HI GCNGC 4 cut(s) 94, 192, 232, 381
Fsp4HI GCNGC 4 cut(s) 94, 192, 232, 381
GlaI GCGC 2 cut(s) 39, 51
GluI GCNGC 4 cut(s) 94, 192, 232, 381
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 3 cut(s) 87, 102, 200
HapII CCGG 5 cut(s) 78, 99, 117, 269, 282
HgaI GACGC 3 cut(s) 110, 325, 364
HhaI GCGC 2 cut(s) 40, 52
Hin1I GRCGYC 3 cut(s) 38, 121, 375
Hin1II CATG 3 cut(s) 16, 230, 325
Hin6I GCGC 2 cut(s) 38, 50
HinP1I GCGC 2 cut(s) 38, 50
HinfI GANTC 1 cut(s) 154
HpaII CCGG 5 cut(s) 78, 99, 117, 269, 282
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 338, 357
Hpy99I CGWCG 2 cut(s) 319, 380
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 99, 197, 231, 325
HpyF3I CTNAG 2 cut(s) 195, 303
Hsp92I GRCGYC 3 cut(s) 38, 121, 375
Hsp92II CATG 3 cut(s) 16, 230, 325
HspAI GCGC 2 cut(s) 38, 50
KasI GGCGCC 1 cut(s) 37
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MluCI AATT 1 cut(s) 332
Mly113I GGCGCC 1 cut(s) 38
MnlI CCTC 6 cut(s) 51, 76, 78, 81, 141, 190
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 1 cut(s) 138
MspI CCGG 5 cut(s) 78, 99, 117, 269, 282
MspR9I CCNGG 4 cut(s) 118, 203, 269, 283
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 5 cut(s) 93, 99, 197, 231, 325
NaeI GCCGGC 1 cut(s) 79
NarI GGCGCC 1 cut(s) 38
NciI CCSGG 3 cut(s) 118, 269, 283
NcoI CCATGG 1 cut(s) 226
NdeII GATC 1 cut(s) 159
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 3 cut(s) 16, 230, 325
NlaIV GGNNCC 2 cut(s) 39, 97
NmuCI GTSAC 1 cut(s) 263
NruI TCGCGA 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PctI GAATGC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 4 cut(s) 95, 193, 233, 382
PluTI GGCGCC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 39, 97
PspPI GGNCC 2 cut(s) 85, 199
RruI TCGCGA 1 cut(s) 358
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 4 cut(s) 94, 192, 232, 381
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 2 cut(s) 85, 199
ScrFI CCNGG 4 cut(s) 118, 203, 269, 283
SetI ASST 1 cut(s) 313
SfaNI GCATC 1 cut(s) 331
SfoI GGCGCC 1 cut(s) 39
Sse9I AATT 1 cut(s) 332
SsiI CCGC 4 cut(s) 65, 93, 186, 231
SspDI GGCGCC 1 cut(s) 37
StyD4I CCNGG 4 cut(s) 116, 201, 267, 281
StyI CCWWGG 1 cut(s) 226
TaqI TCGA 2 cut(s) 243, 369
TasI AATT 1 cut(s) 332
TauI GCSGC 2 cut(s) 96, 234
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 2 cut(s) 191, 380
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 29, 241
XapI RAATTY 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.