Rh7AG478100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004556
Physical Location & Seq
Forward (+)
66996451 .. 66996783
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG478100.1

Sequence Viewer

Length: 333 bp
ATGGCTGGGATCGATGTGACGCCTATGTGGCTACGATTGAACTTCCCCCAGGCTGCTGATGATGCGCTTGTTAAAACAAATAGAGGAGCACTGCTAGTAGGCGGAGGAGCCAACGGAACCATTTGGCTGCTGTTGAGTGAGGAGATGAGTCTTGCCGATGCCATTGGGTATGGCAGCGATGTTGATCTTGGGTCCTTAGGGTTTGATCTGTTTGGACTAGAGACTAATGCAAAGAACGGGGGAGCACTACTACAAGCGTGTGACAGTGATGTCACGGTGAGGATGCTGATGTCGGCGAAGCTGGCTGCTGATGGCAGAATTACATGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.47

Weight (kDa)

4.23

Isoelectric Point (pI)

22.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw21I GWGCWC 2 cut(s) 91, 247
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 17
ApeKI GCWGC 4 cut(s) 53, 127, 174, 305
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 289
AvaII GGWCC 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 196
Bbv12I GWGCWC 2 cut(s) 91, 247
BbvI GCAGC 4 cut(s) 40, 114, 186, 292
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 2 cut(s) 95, 218
BglI GCCNNNNNGGC 1 cut(s) 28
BisI GCNGC 4 cut(s) 54, 128, 175, 306
BlsI GCNGC 4 cut(s) 55, 129, 176, 307
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 3 cut(s) 109, 118, 193
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 52, 148, 273
Bsa29I ATCGAT 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 48
Bse21I CCTNAGG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 183
BseRI GAGGAG 3 cut(s) 99, 120, 155
BseXI GCAGC 4 cut(s) 40, 114, 186, 292
BseYI CCCAGC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 12
BsiHKAI GWGCWC 2 cut(s) 91, 247
BsmAI GTCTC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 91, 247
Bsp143I GATC 3 cut(s) 9, 184, 205
BspACI CCGC 1 cut(s) 102
BspDI ATCGAT 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 109, 118, 193
BspPI GGATC 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 3 cut(s) 9, 184, 205
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 266, 277
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 196, 330
BstF5I GGATG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 3 cut(s) 12, 187, 208
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 3 cut(s) 9, 184, 205
BstMWI GCNNNNNNNGC 3 cut(s) 28, 62, 302
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 40, 114, 186, 292
Bsu15I ATCGAT 1 cut(s) 12
Bsu36I CCTNAGG 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 288
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 89, 271
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 192
ClaI ATCGAT 1 cut(s) 12
CseI GACGC 1 cut(s) 28
CviAII CATG 1 cut(s) 324
CviJI RGCY 8 cut(s) 5, 31, 53, 110, 127, 301, 305, 329
CviKI_1 RGCY 8 cut(s) 5, 31, 53, 110, 127, 301, 305, 329
DdeI CTNAG 2 cut(s) 196, 330
DpnI GATC 3 cut(s) 11, 186, 207
DpnII GATC 3 cut(s) 9, 184, 205
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 327
FaiI YATR 3 cut(s) 26, 171, 325
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 4 cut(s) 54, 128, 175, 306
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 4 cut(s) 54, 128, 175, 306
FspBI CTAG 2 cut(s) 95, 218
GlaI GCGC 1 cut(s) 66
GluI GCNGC 4 cut(s) 54, 128, 175, 306
GsaI CCCAGC 1 cut(s) 9
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 1 cut(s) 327
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 148
HphI GGTGA 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 266, 277
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 62, 302
HpyF3I CTNAG 2 cut(s) 196, 330
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 327
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 3 cut(s) 9, 184, 205
LmnI GCTCC 3 cut(s) 86, 107, 242
LpnPI CCDG 3 cut(s) 35, 62, 287
Lsp1109I GCAGC 4 cut(s) 40, 114, 186, 292
LweI GCATC 3 cut(s) 52, 148, 273
MaeI CTAG 2 cut(s) 95, 218
MaeIII GTNAC 3 cut(s) 16, 260, 271
MalI GATC 3 cut(s) 11, 186, 207
MboI GATC 3 cut(s) 9, 184, 205
MhlI GDGCHC 2 cut(s) 91, 247
MluCI AATT 1 cut(s) 318
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 4 cut(s) 77, 98, 133, 273
MseI TTAA 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 28, 62, 302
NdeII GATC 3 cut(s) 9, 184, 205
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 3 cut(s) 109, 118, 193
NmuCI GTSAC 3 cut(s) 16, 260, 271
PkrI GCNGC 4 cut(s) 55, 129, 176, 307
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PpuMI RGGWCCY 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 109, 118, 193
PspPI GGNCC 1 cut(s) 192
PspPPI RGGWCCY 1 cut(s) 192
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 4 cut(s) 54, 128, 175, 306
Sau3AI GATC 3 cut(s) 9, 184, 205
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 2 cut(s) 91, 247
SetI ASST 1 cut(s) 303
SfaNI GCATC 3 cut(s) 52, 148, 273
SinI GGWCC 1 cut(s) 192
Sse9I AATT 1 cut(s) 318
SsiI CCGC 1 cut(s) 102
SspMI CTAG 2 cut(s) 95, 218
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 266, 277
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 318
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 96, 271
TseFI GTSAC 3 cut(s) 16, 260, 271
TseI GCWGC 4 cut(s) 53, 127, 174, 305
Tsp45I GTSAC 3 cut(s) 16, 260, 271
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 2 cut(s) 96, 271
VpaK11BI GGWCC 1 cut(s) 192
XspI CTAG 2 cut(s) 95, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.