Rh6DG297100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004556
Physical Location & Seq
Reverse (-)
49887091 .. 49887414
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG297100.1

Sequence Viewer

Length: 324 bp
ATGGCTGGGGTCGGTGTGACGCTCATGTGGATGCGATTCCCTGAGGCTGCTGGGGGTTTGCAATTATGGTACGACGACGCAGTCGTCGATATAAGACCGGGTTTTATTGAAGAAGATAGTGATGCAGTCGATGCCATTGGTTATGGCGGCGATGCGGATCTTGGGTCCTTGGGTTTTGATCTGTTTGAACTAGAAATCAATATGAAGGATGGACGTGCGCCACTACGTCCTAGCGGGGTGGACTTGCTGATATTGGTGAAGCGGGCTGCTGGATGGCTGGTTGATCGGCCGTCGGCGACTCCGATGGCAGGGATAGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.4

Weight (kDa)

4.13

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 80, 83
AciI CCGC 4 cut(s) 147, 155, 234, 262
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 287
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 2 cut(s) 110, 188
AjiI CACGTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 165
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 47, 266
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 165
AxyI CCTNAGG 1 cut(s) 42
BbvI GCAGC 2 cut(s) 34, 253
BccI CCATC 3 cut(s) 203, 267, 298
BceAI ACGGC 1 cut(s) 274
BcnI CCSGG 1 cut(s) 99
BfaI CTAG 2 cut(s) 191, 231
BisI GCNGC 3 cut(s) 48, 148, 267
BlsI GCNGC 3 cut(s) 49, 149, 268
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 4 cut(s) 21, 112, 121, 142
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse21I CCTNAGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 36, 214, 278
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 33
BseX3I CGGCCG 1 cut(s) 287
BseXI GCAGC 2 cut(s) 34, 253
BseYI CCCAGC 2 cut(s) 5, 50
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 308
BsnI GGCC 1 cut(s) 289
Bsp143I GATC 3 cut(s) 157, 178, 283
BspACI CCGC 4 cut(s) 147, 155, 234, 262
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 157, 178, 283
BssT1I CCWWGG 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 3 cut(s) 36, 214, 278
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 3 cut(s) 160, 181, 286
BstMBI GATC 3 cut(s) 157, 178, 283
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 131, 314
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 34, 253
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BstZI CGGCCG 1 cut(s) 287
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 3 cut(s) 36, 214, 278
Cac8I GCNNGC 1 cut(s) 264
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 165
CseI GACGC 2 cut(s) 28, 86
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 25, 318
CviJI RGCY 5 cut(s) 5, 47, 266, 277, 289
CviKI_1 RGCY 5 cut(s) 5, 47, 266, 277, 289
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 42
DpnI GATC 3 cut(s) 159, 180, 285
DpnII GATC 3 cut(s) 157, 178, 283
DrdI GACNNNNNNGTC 2 cut(s) 80, 83
DseDI GACNNNNNNGTC 2 cut(s) 80, 83
EaeI YGGCCR 1 cut(s) 287
EagI CGGCCG 1 cut(s) 287
EclXI CGGCCG 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 165
Eco52I CGGCCG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 28, 321
FaiI YATR 6 cut(s) 26, 67, 92, 144, 203, 319
FatI CATG 2 cut(s) 24, 317
FauI CCCGC 2 cut(s) 227, 255
Fnu4HI GCNGC 3 cut(s) 48, 148, 267
FokI GGATG 3 cut(s) 43, 221, 285
Fsp4HI GCNGC 3 cut(s) 48, 148, 267
FspBI CTAG 2 cut(s) 191, 231
GlaI GCGC 1 cut(s) 219
GluI GCNGC 3 cut(s) 48, 148, 267
GsaI CCCAGC 2 cut(s) 9, 54
HaeIII GGCC 1 cut(s) 289
HapII CCGG 1 cut(s) 98
HgaI GACGC 2 cut(s) 28, 86
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 28, 321
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 2 cut(s) 36, 298
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 303
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 4 cut(s) 77, 80, 89, 295
HpyAV CCTTC 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 214, 226
HpyCH4V TGCA 2 cut(s) 61, 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 314
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 2 cut(s) 214, 226
Hsp92II CATG 2 cut(s) 28, 321
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 3 cut(s) 157, 178, 283
LpnPI CCDG 6 cut(s) 36, 54, 111, 255, 263, 294
Lsp1109I GCAGC 2 cut(s) 34, 253
LweI GCATC 4 cut(s) 21, 112, 121, 142
MaeI CTAG 2 cut(s) 191, 231
MaeII ACGT 2 cut(s) 214, 226
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 159, 180, 285
MboI GATC 3 cut(s) 157, 178, 283
MboII GAAGA 2 cut(s) 122, 125
MflI RGATCY 1 cut(s) 157
MluCI AATT 1 cut(s) 62
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 1 cut(s) 37
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 131, 314
NciI CCSGG 1 cut(s) 99
NdeII GATC 3 cut(s) 157, 178, 283
NlaIII CATG 2 cut(s) 28, 321
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 321
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 84, 299
PfeI GAWTC 1 cut(s) 36
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 49, 149, 268
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PpuMI RGGWCCY 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 165
PspFI CCCAGC 2 cut(s) 5, 50
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 165
PspPPI RGGWCCY 1 cut(s) 165
PsuI RGATCY 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 3 cut(s) 48, 148, 267
Sau3AI GATC 3 cut(s) 157, 178, 283
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 99
SetI ASST 2 cut(s) 217, 229
SfaNI GCATC 4 cut(s) 21, 112, 121, 142
SinI GGWCC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 1 cut(s) 62
SsiI CCGC 4 cut(s) 147, 155, 234, 262
SspMI CTAG 2 cut(s) 191, 231
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 2 cut(s) 217, 229
TaqI TCGA 2 cut(s) 87, 129
TasI AATT 1 cut(s) 62
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 36
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 47, 266
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 165
XceI RCATGY 1 cut(s) 321
XspI CTAG 2 cut(s) 191, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.