Rh3DG236400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004556
Physical Location & Seq
Forward (+)
22617564 .. 22620844
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG236400.1

Sequence Viewer

Length: 321 bp
ATGCCAAAGACTGTGCACACCTTACTTGAGACTTATATGGCCCTGATACTGTGGGCTGGAGAAAGCCAGGACGACGGTGAAAGGGGGAAACGATTCATTCACGATGGTGACCAGATTTCCTTGTCCGGGTTGCCTCCTACAATGGCTGGGATCGGTGGGCTAGTATGTGGTGGAGCCAACGGAGTTGTTGATGCCACTGATTATGGCGGAGGTGTGGATCTGGGGTCCTTGAGTTTTGACTTGATCAGACTGGAGATCAATATGAAGGATGGAGGCGAGCCACTATGTGTTATTGCAGTGGGACTGCTGCGGTCGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.02

Weight (kDa)

4.47

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 207, 310
AclWI GGATC 2 cut(s) 158, 225
AdeI CACNNNGTG 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 126
AjnI CCWGG 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 105
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 23
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 2 cut(s) 158, 225
AoxI GGCC 1 cut(s) 39
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 307
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 40, 225
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 89, 119
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 98, 263
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 1 cut(s) 243
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 68, 127
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 40, 225
BmiI GGNNCC 2 cut(s) 175, 226
BmrFI CCNGG 2 cut(s) 68, 127
BmsI GCATC 1 cut(s) 181
BpmI CTGGAG 2 cut(s) 78, 272
BpuEI CTTGAG 2 cut(s) 47, 250
BpuMI CCSGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 294
BseYI CCCAGC 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 4 cut(s) 150, 217, 243, 255
BspACI CCGC 2 cut(s) 207, 310
BspANI GGCC 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 175, 226
BspPI GGATC 2 cut(s) 158, 225
BsrI ACTGG 1 cut(s) 255
BssMI GATC 4 cut(s) 150, 217, 243, 255
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 3 cut(s) 13, 51, 77
BstC8I GCNNGC 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 4 cut(s) 153, 220, 246, 258
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 150, 217, 243, 255
BstMCI CGRYCG 1 cut(s) 314
BstNI CCWGG 1 cut(s) 68
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 66, 125
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 195, 303
Cac8I GCNNGC 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 40, 225
CviJI RGCY 7 cut(s) 41, 56, 66, 146, 160, 176, 280
CviKI_1 RGCY 7 cut(s) 41, 56, 66, 146, 160, 176, 280
DpnI GATC 4 cut(s) 152, 219, 245, 257
DpnII GATC 4 cut(s) 150, 217, 243, 255
DraIII CACNNNGTG 1 cut(s) 287
EciI GGCGGA 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 225
EcoO65I GGTNACC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 66
FaiI YATR 7 cut(s) 36, 38, 166, 204, 263, 286, 319
FaqI GGGAC 1 cut(s) 315
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 308
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 2 cut(s) 78, 272
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 126
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 89, 119
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 3 cut(s) 13, 51, 77
HpyCH4V TGCA 2 cut(s) 16, 296
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 4 cut(s) 150, 217, 243, 255
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 9 cut(s) 42, 53, 56, 80, 125, 132, 139, 206, 236
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 107
MalI GATC 4 cut(s) 152, 219, 245, 257
MboI GATC 4 cut(s) 150, 217, 243, 255
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 18
MnlI CCTC 3 cut(s) 144, 203, 266
MroXI GAANNNNTTC 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 68, 127
MvaI CCWGG 1 cut(s) 68
NciI CCSGG 1 cut(s) 127
NdeII GATC 4 cut(s) 150, 217, 243, 255
NlaIV GGNNCC 2 cut(s) 175, 226
NmuCI GTSAC 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 309
PpuMI RGGWCCY 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 175, 226
PspPI GGNCC 2 cut(s) 40, 225
PspPPI RGGWCCY 1 cut(s) 225
PsuI RGATCY 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 4 cut(s) 150, 217, 243, 255
Sau96I GGNCC 2 cut(s) 40, 225
ScrFI CCNGG 2 cut(s) 68, 127
SduI GDGCHC 1 cut(s) 18
SetI ASST 2 cut(s) 23, 214
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 26, 229
SmoI CTYRAG 2 cut(s) 26, 229
SsiI CCGC 2 cut(s) 207, 310
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 66, 125
TaaI ACNGT 3 cut(s) 13, 51, 77
TfiI GAWTC 1 cut(s) 93
TscAI CASTG 2 cut(s) 202, 303
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 85, 278
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 202, 303
VneI GTGCAC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.