Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Reverse (-)

79418018 .. 79418700

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036340

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGCTGATGATGCGCTTGTTGAAGCAGATAGAGGAGCACTGCTAGTTGGCGGAGGAGCCAACGGAACCATTTGGTTGCTGTTGAGTGAGGAGATGAGTTTTGCCGATGCCATTGGGTATGGTGGCGATGTTGCTCTTGGGTCTTTAGGGTTTGATCTGTTTGGACCGGAGACCGATGCAAAGGACGGGGGAGCGCTACTACAAGCGTGTGACGATGATGTCGCGGTGAGGATGCTGATATTGGTGAAGTTGGCTGCTGGTGGCAGAATTACATGGGCTCGGGCTTGGGTCCATAACTGGATTTGGGCGTCCAGATTAATATGGCAGGCGGTGTGTTGCTTTTGGGCTCCTATCCGTGCCCAACTCTCGATGGCTTGGACGGCGAAGACAGAGGACTTACCGTCGACTATGTCAGTGTTCAAATCATGGTTGGTTGAATGGCCGTCGGCGACTCTGGTGGCAGGGAAAGCATGCTGGGGTGTCCATGGGCTTCTTGGGCCACTGGTTGAGATTACAACTCTGAAATCAAGTTTTGGGGCGGGATCTCTTGGGTCCAGAATTAGCATTGGGTCTTTGTACCAATTATTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.06

Weight (kDa)

4.79

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	407
AccII	CGCG	1 cut(s)	227
AciI	CCGC	4 cut(s)	54, 227, 332, 542
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	1 cut(s)	443
AcyI	GRCGYC	1 cut(s)	311
AfaI	GTAC	1 cut(s)	581
AfeI	AGCGCT	1 cut(s)	198
AgsI	TTSAA	3 cut(s)	26, 424, 440
AhdI	GACNNNNNGTC	1 cut(s)	403
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	198
AoxI	GGCC	2 cut(s)	443, 500
ApeKI	GCWGC	2 cut(s)	5, 257
AseI	ATTAAT	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	19, 199
AspS9I	GGNCC	4 cut(s)	167, 292, 500, 555
AsuHPI	GGTGA	2 cut(s)	241, 259
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	3 cut(s)	167, 292, 555
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	2 cut(s)	283, 352
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	399, 430
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	2 cut(s)	6, 258
BlsI	GCNGC	2 cut(s)	7, 259
Bme18I	GGWCC	3 cut(s)	167, 292, 555
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	4 cut(s)	167, 292, 500, 555
BmiI	GGNNCC	5 cut(s)	61, 70, 293, 351, 556
BmsI	GCATC	4 cut(s)	4, 100, 169, 225
BpiI	GAAGAC	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	487
BsaWI	WCCGGW	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	305, 510
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	305, 510
BseRI	GAGGAG	3 cut(s)	51, 72, 107
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	445, 502
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	445, 502
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	4 cut(s)	43, 283, 352, 364
Bsp143I	GATC	2 cut(s)	157, 545
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	4 cut(s)	54, 227, 332, 542
BspANI	GGCC	2 cut(s)	445, 502
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	5 cut(s)	61, 70, 293, 351, 556
BspPI	GGATC	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	305, 510
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	2 cut(s)	157, 545
BssNI	GRCGYC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	330, 475
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	19, 199
BstKTI	GATC	2 cut(s)	160, 548
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	157, 545
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 383, 470, 499
BstNSI	RCATGY	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	445, 502
BtgI	CCRYGG	1 cut(s)	487
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	3 cut(s)	41, 423, 503
Cac8I	GCNNGC	2 cut(s)	330, 475
CfoI	GCGC	2 cut(s)	19, 199
Cfr13I	GGNCC	4 cut(s)	167, 292, 500, 555
CseI	GACGC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	4 cut(s)	276, 429, 474, 488
CviQI	GTAC	1 cut(s)	580
DpnI	GATC	2 cut(s)	159, 547
DpnII	GATC	2 cut(s)	157, 545
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	2 cut(s)	283, 352
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	3 cut(s)	167, 292, 555
Eco47III	AGCGCT	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	2 cut(s)	283, 352
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	4 cut(s)	279, 432, 477, 491
FaiI	YATR	8 cut(s)	123, 277, 297, 325, 413, 430, 475, 489
FatI	CATG	4 cut(s)	275, 428, 473, 487
FauI	CCCGC	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	2 cut(s)	6, 258
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	2 cut(s)	283, 352
Fsp4HI	GCNGC	2 cut(s)	6, 258
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	2 cut(s)	18, 198
GluI	GCNGC	2 cut(s)	6, 258
GsaI	CCCAGC	1 cut(s)	481
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	445, 502
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	2 cut(s)	19, 199
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	279, 432, 477, 491
Hin6I	GCGC	2 cut(s)	17, 197
HinP1I	GCGC	2 cut(s)	17, 197
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	241, 259
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	3 cut(s)	315, 370, 558
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	2 cut(s)	409, 451
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 383, 470, 499
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	279, 432, 477, 491
HspAI	GCGC	2 cut(s)	17, 197
Kzo9I	GATC	2 cut(s)	157, 545
LmnI	GCTCC	4 cut(s)	38, 59, 194, 355
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	4 cut(s)	4, 100, 169, 225
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	159, 547
MboI	GATC	2 cut(s)	157, 545
MboII	GAAGA	1 cut(s)	400
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	4 cut(s)	43, 283, 352, 364
MluCI	AATT	4 cut(s)	270, 561, 584, 592
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	5 cut(s)	29, 50, 85, 225, 388
MseI	TTAA	2 cut(s)	320, 591
MspI	CCGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	4 cut(s)	14, 383, 470, 499
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	2 cut(s)	157, 545
NlaIII	CATG	4 cut(s)	279, 432, 477, 491
NlaIV	GGNNCC	5 cut(s)	61, 70, 293, 351, 556
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	477
PaeI	GCATGC	1 cut(s)	477
PflFI	GACNNNGTC	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	7, 259
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	477
PspN4I	GGNNCC	5 cut(s)	61, 70, 293, 351, 556
PspPI	GGNCC	4 cut(s)	167, 292, 500, 555
PsuI	RGATCY	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	412
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SalI	GTCGAC	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	320, 591
SatI	GCNGC	2 cut(s)	6, 258
Sau3AI	GATC	2 cut(s)	157, 545
Sau96I	GGNCC	4 cut(s)	167, 292, 500, 555
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	4 cut(s)	43, 283, 352, 364
SfaNI	GCATC	4 cut(s)	4, 100, 169, 225
SinI	GGWCC	3 cut(s)	167, 292, 555
SphI	GCATGC	1 cut(s)	477
Sse9I	AATT	4 cut(s)	270, 561, 584, 592
SsiI	CCGC	4 cut(s)	54, 227, 332, 542
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	405
TaqI	TCGA	2 cut(s)	371, 407
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	4 cut(s)	270, 561, 584, 592
Tru1I	TTAA	2 cut(s)	320, 591
Tru9I	TTAA	2 cut(s)	320, 591
TscAI	CASTG	3 cut(s)	48, 423, 510
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	5, 257
Tsp45I	GTSAC	1 cut(s)	212
TspGWI	ACGGA	2 cut(s)	81, 347
TspRI	CASTG	3 cut(s)	48, 423, 510
Tth111I	GACNNNGTC	1 cut(s)	412
VpaK11BI	GGWCC	3 cut(s)	167, 292, 555
VspI	ATTAAT	1 cut(s)	320
XceI	RCATGY	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	407
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.