Rh1BG133900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004556
Physical Location & Seq
Reverse (-)
22388041 .. 22389853
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG133900.1

Sequence Viewer

Length: 645 bp
ATGGTTGCTGTCTTCATTGATGGTATTGGCGTGGTTGTTTCGGGTTTGGATCTGGGACATATTGGAGATCCTTTCCCTCAAGAGGTGGTGGTTGCAGGTAATGGGGGCAGTGGCTTGGCCCCTTTCGCTGCAAGTGGAGTGGTAGAGTGCCTCAGCTTCACGACGACGATGGCGCTGGCTTTGCCCTATGATGATGACCAATGGCAAAGTCACATTGGTATCAAGTGGATCCCGTTACCCACCCTGTTAATTCGGGCTGGCAAAAGCCATGGCGGTGGTGAAAGGGTGGAACGCTTCATCCACGATGGTGACCAGGTTTCCTCGTCCTGGTTGCCTCCTACAATTGTTGAGACCAGTGTGACGCCTATGTGGCTGCAATTGAACATCCCCGAGGCTGCTGAGGGCGCGCTGCTAATAGGCGGAGGAGCCAAAGGAACCATTTGGCTGCTGTGGACTAAGGAGATATGCTTTGCCGATGCCACTGGGTATGGCGGCGATGTTGATCTCGGCCCGGAGACCAATGCAAAGGATGGAGGAGCGTCACTACAAGCAGGTGACGGAGATGTACGTCGTGGTGAGAATGCTGACGCCGGTGAAGCTGGATGCTGGTGGTGGAATTTCATGGGCTCGGGCTCTGGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

22.24

Weight (kDa)

4.29

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 542
Acc36I ACCTGC 2 cut(s) 86, 542
AccB1I GGYRCC 1 cut(s) 638
AccII CGCG 1 cut(s) 407
AciI CCGC 3 cut(s) 273, 420, 492
AclWI GGATC 4 cut(s) 57, 62, 223, 236
AcsI RAATTY 1 cut(s) 616
AcyI GRCGYC 2 cut(s) 362, 588
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 2 cut(s) 82, 327
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 2 cut(s) 312, 326
AleI CACNNNNGTG 1 cut(s) 306
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 2 cut(s) 156, 599
AluI AGCT 2 cut(s) 156, 599
Alw26I GTCTC 2 cut(s) 344, 509
AlwI GGATC 4 cut(s) 57, 62, 223, 236
Ama87I CYCGRG 2 cut(s) 389, 628
AoxI GGCC 2 cut(s) 117, 508
ApeKI GCWGC 5 cut(s) 128, 373, 395, 409, 445
ApoI RAATTY 1 cut(s) 616
AspLEI GCGC 3 cut(s) 175, 407, 409
AspS9I GGNCC 2 cut(s) 118, 509
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 5 cut(s) 290, 320, 566, 587, 605
AvaI CYCGRG 2 cut(s) 389, 628
BaeI ACNNNNGTAYC 2 cut(s) 202, 235
BamHI GGATCC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 638
BanII GRGCYC 2 cut(s) 629, 635
BbsI GAAGAC 1 cut(s) 4
BbvCI CCTCAGC 2 cut(s) 152, 399
BbvI GCAGC 5 cut(s) 115, 360, 382, 396, 432
BccI CCATC 4 cut(s) 14, 163, 299, 524
BciT130I CCWGG 2 cut(s) 314, 328
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 2 cut(s) 344, 509
BfoI RGCGCY 1 cut(s) 176
BfuAI ACCTGC 2 cut(s) 86, 542
BglI GCCNNNNNGGC 1 cut(s) 370
BisI GCNGC 6 cut(s) 129, 374, 396, 410, 446, 493
BlsI GCNGC 6 cut(s) 130, 375, 397, 411, 447, 494
Bme1390I CCNGG 3 cut(s) 314, 328, 512
BmeT110I CYCGRG 2 cut(s) 389, 628
BmgT120I GGNCC 2 cut(s) 118, 509
BmiI GGNNCC 5 cut(s) 120, 230, 427, 436, 640
BmrFI CCNGG 3 cut(s) 314, 328, 512
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 2 cut(s) 466, 593
BmuI ACTGGG 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 4
Bpu10I CCTNAGC 2 cut(s) 152, 399
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 2 cut(s) 362, 588
BsaI GGTCTC 2 cut(s) 344, 509
BsaJI CCNNGG 2 cut(s) 268, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 327
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 2 cut(s) 354, 487
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 2 cut(s) 314, 328
BseDI CCNNGG 2 cut(s) 268, 390
BseGI GGATG 4 cut(s) 297, 384, 535, 608
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 82, 327
BseMII CTCAG 2 cut(s) 166, 390
BseNI ACTGG 2 cut(s) 354, 487
BsePI GCGCGC 1 cut(s) 405
BseRI GAGGAG 2 cut(s) 438, 549
BseXI GCAGC 5 cut(s) 115, 360, 382, 396, 432
Bsh1236I CGCG 1 cut(s) 407
BshFI GGCC 2 cut(s) 119, 510
BshNI GGYRCC 1 cut(s) 638
BsiHKCI CYCGRG 2 cut(s) 389, 628
BsiSI CCGG 2 cut(s) 512, 591
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 82, 327
BsmAI GTCTC 2 cut(s) 344, 509
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 2 cut(s) 119, 510
Bso31I GGTCTC 2 cut(s) 344, 509
BsoBI CYCGRG 2 cut(s) 389, 628
Bsp1286I GDGCHC 2 cut(s) 629, 635
Bsp143I GATC 4 cut(s) 49, 67, 228, 502
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 3 cut(s) 273, 420, 492
BspANI GGCC 2 cut(s) 119, 510
BspCNI CTCAG 2 cut(s) 165, 391
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 5 cut(s) 120, 230, 427, 436, 640
BspMI ACCTGC 2 cut(s) 86, 542
BspPI GGATC 4 cut(s) 57, 62, 223, 236
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 2 cut(s) 344, 509
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 2 cut(s) 354, 487
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 268, 390
BssHII GCGCGC 1 cut(s) 405
BssMI GATC 4 cut(s) 49, 67, 228, 502
BssNI GRCGYC 2 cut(s) 362, 588
BssT1I CCWWGG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 314, 328
BstACI GRCGYC 2 cut(s) 362, 588
BstC8I GCNNGC 3 cut(s) 177, 259, 407
BstDEI CTNAG 3 cut(s) 152, 399, 456
BstDSI CCRYGG 1 cut(s) 268
BstEII GGTNACC 1 cut(s) 308
BstF5I GGATG 4 cut(s) 297, 384, 535, 608
BstFNI CGCG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 3 cut(s) 175, 407, 409
BstKTI GATC 4 cut(s) 52, 70, 231, 505
BstMAI GTCTC 2 cut(s) 344, 509
BstMBI GATC 4 cut(s) 49, 67, 228, 502
BstMWI GCNNNNNNNGC 5 cut(s) 125, 181, 370, 404, 596
BstNI CCWGG 2 cut(s) 314, 328
BstPI GGTNACC 1 cut(s) 308
BstSCI CCNGG 3 cut(s) 312, 326, 510
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 5 cut(s) 115, 360, 382, 396, 432
BstV2I GAAGAC 1 cut(s) 4
BstX2I RGATCY 3 cut(s) 49, 67, 228
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 3 cut(s) 49, 67, 228
BsuRI GGCC 2 cut(s) 119, 510
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 4 cut(s) 297, 384, 535, 608
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 3 cut(s) 115, 361, 480
BveI ACCTGC 2 cut(s) 86, 542
Cac8I GCNNGC 3 cut(s) 177, 259, 407
CfoI GCGC 3 cut(s) 175, 407, 409
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 2 cut(s) 118, 509
CseI GACGC 3 cut(s) 370, 528, 596
CsiI ACCWGGT 1 cut(s) 312
Csp6I GTAC 1 cut(s) 566
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 2 cut(s) 269, 622
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 3 cut(s) 152, 399, 456
DpnI GATC 4 cut(s) 51, 69, 230, 504
DpnII GATC 4 cut(s) 49, 67, 228, 502
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 1 cut(s) 268
Eco24I GRGCYC 2 cut(s) 629, 635
Eco31I GGTCTC 2 cut(s) 344, 509
Eco88I CYCGRG 2 cut(s) 389, 628
Eco91I GGTNACC 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 312, 326
EcoT14I CCWWGG 1 cut(s) 268
EcoT38I GRGCYC 2 cut(s) 629, 635
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 2 cut(s) 272, 625
FaiI YATR 7 cut(s) 60, 189, 270, 368, 466, 489, 623
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 268, 621
Fnu4HI GCNGC 6 cut(s) 129, 374, 396, 410, 446, 493
FokI GGATG 4 cut(s) 284, 371, 542, 615
FriOI GRGCYC 2 cut(s) 629, 635
Fsp4HI GCNGC 6 cut(s) 129, 374, 396, 410, 446, 493
GlaI GCGC 3 cut(s) 174, 406, 408
GluI GCNGC 6 cut(s) 129, 374, 396, 410, 446, 493
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 2 cut(s) 119, 510
HapII CCGG 2 cut(s) 512, 591
HgaI GACGC 3 cut(s) 370, 528, 596
HhaI GCGC 3 cut(s) 175, 407, 409
Hin1I GRCGYC 2 cut(s) 362, 588
Hin1II CATG 2 cut(s) 272, 625
Hin6I GCGC 3 cut(s) 173, 405, 407
HinP1I GCGC 3 cut(s) 173, 405, 407
HpaII CCGG 2 cut(s) 512, 591
HphI GGTGA 5 cut(s) 290, 320, 566, 587, 605
Hpy166II GTNNAC 1 cut(s) 453
Hpy188III TCNNGA 2 cut(s) 80, 160
Hpy8I GTNNAC 1 cut(s) 453
Hpy99I CGWCG 3 cut(s) 166, 169, 573
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 4 cut(s) 95, 131, 376, 524
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 181, 370, 404, 596
HpyF3I CTNAG 3 cut(s) 152, 399, 456
HpySE526I ACGT 1 cut(s) 568
Hsp92I GRCGYC 2 cut(s) 362, 588
Hsp92II CATG 2 cut(s) 272, 625
HspAI GCGC 3 cut(s) 173, 405, 407
Kzo9I GATC 4 cut(s) 49, 67, 228, 502
LmnI GCTCC 2 cut(s) 425, 536
Lsp1109I GCAGC 5 cut(s) 115, 360, 382, 396, 432
LweI GCATC 2 cut(s) 466, 593
MabI ACCWGGT 1 cut(s) 312
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 6 cut(s) 209, 234, 308, 358, 540, 554
MalI GATC 4 cut(s) 51, 69, 230, 504
MboI GATC 4 cut(s) 49, 67, 228, 502
MboII GAAGA 1 cut(s) 4
MfeI CAATTG 2 cut(s) 342, 377
MflI RGATCY 3 cut(s) 49, 67, 228
MhlI GDGCHC 2 cut(s) 629, 635
MluCI AATT 4 cut(s) 249, 342, 377, 616
MnlI CCTC 9 cut(s) 76, 87, 161, 331, 345, 385, 394, 416, 527
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 2 cut(s) 273, 306
MspI CCGG 2 cut(s) 512, 591
MspR9I CCNGG 3 cut(s) 314, 328, 512
MunI CAATTG 2 cut(s) 342, 377
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 2 cut(s) 314, 328
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 5 cut(s) 125, 181, 370, 404, 596
NciI CCSGG 1 cut(s) 512
NcoI CCATGG 1 cut(s) 268
NdeII GATC 4 cut(s) 49, 67, 228, 502
NlaIII CATG 2 cut(s) 272, 625
NlaIV GGNNCC 5 cut(s) 120, 230, 427, 436, 640
NmeAIII GCCGAG 1 cut(s) 486
NmuCI GTSAC 5 cut(s) 209, 308, 358, 540, 554
OliI CACNNNNGTG 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 542
PauI GCGCGC 1 cut(s) 405
PctI GAATGC 1 cut(s) 586
PkrI GCNGC 6 cut(s) 130, 375, 397, 411, 447, 494
Psp6I CCWGG 2 cut(s) 312, 326
PspEI GGTNACC 1 cut(s) 308
PspGI CCWGG 2 cut(s) 312, 326
PspN4I GGNNCC 5 cut(s) 120, 230, 427, 436, 640
PspPI GGNCC 2 cut(s) 118, 509
PsuI RGATCY 3 cut(s) 49, 67, 228
PteI GCGCGC 1 cut(s) 405
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
RseI CAYNNNNRTG 2 cut(s) 273, 306
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 6 cut(s) 129, 374, 396, 410, 446, 493
Sau3AI GATC 4 cut(s) 49, 67, 228, 502
Sau96I GGNCC 2 cut(s) 118, 509
ScrFI CCNGG 3 cut(s) 314, 328, 512
SduI GDGCHC 2 cut(s) 629, 635
SetI ASST 7 cut(s) 87, 100, 158, 318, 556, 571, 601
SexAI ACCWGGT 1 cut(s) 312
SfaNI GCATC 2 cut(s) 466, 593
SgrAI CRCCGGYG 1 cut(s) 590
SmiMI CAYNNNNRTG 2 cut(s) 273, 306
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 4 cut(s) 249, 342, 377, 616
SsiI CCGC 3 cut(s) 273, 420, 492
StyD4I CCNGG 3 cut(s) 312, 326, 510
StyI CCWWGG 1 cut(s) 268
TaiI ACGT 1 cut(s) 571
TasI AATT 4 cut(s) 249, 342, 377, 616
TauI GCSGC 1 cut(s) 495
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 3 cut(s) 115, 361, 487
TseFI GTSAC 5 cut(s) 209, 308, 358, 540, 554
TseI GCWGC 5 cut(s) 128, 373, 395, 409, 445
Tsp45I GTSAC 5 cut(s) 209, 308, 358, 540, 554
TspDTI ATGAA 3 cut(s) 4, 286, 610
TspGWI ACGGA 1 cut(s) 573
TspRI CASTG 3 cut(s) 115, 361, 487
XapI RAATTY 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.