Rh7BG450200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004556
Physical Location & Seq
Forward (+)
52765251 .. 52765759
509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG450200.1

Sequence Viewer

Length: 429 bp
ATGGCGGTGGTGAAAGGGAGGAACGCTTCATCCACGATGGCTACTGGGGGTTCACGACTATGGTACGACGGCGCAGTCGTCGATATAAGACCGGGTTTTATTGAAGAAGACAATGGTGCAGTCGATGCCACTGGTTATGGCGGCGATGTGGATCTTGGGTTCTTGGATCTGTCTGGACCAGAAATCAATATGAAGGATGGAGGCGCGGCACTATGTGCTGGCGGGGTGGAGCTGCTGATATCGGTAAAGCGAGCTGCTGGCTGGCTGGTTGAACGGCAGTTGGCGACTCCGATGGCAGGGATAGCATGCAGGCAGTTTCTTGGGCTCCTTGGGCCGTGGGCTGTGACTGCGGCACTGAAATCAAGTTCTGGGCTGGGATCTCTTGGGTCCAAAATGACCAGTGGGTTTTTATACCCTTTTTTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

14.61

Weight (kDa)

4.98

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 1 cut(s) 206
AciI CCGC 5 cut(s) 5, 141, 206, 222, 350
AclWI GGATC 3 cut(s) 159, 174, 385
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 2 cut(s) 104, 272
AloI GAACNNNNNNTCC 4 cut(s) 14, 46, 143, 175
AluBI AGCT 2 cut(s) 232, 254
AluI AGCT 2 cut(s) 232, 254
AlwI GGATC 3 cut(s) 159, 174, 385
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 232, 254
AspLEI GCGC 2 cut(s) 74, 206
AspS9I GGNCC 3 cut(s) 176, 332, 387
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 2 cut(s) 176, 387
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 219, 241
BccI CCATC 3 cut(s) 31, 191, 286
BceAI ACGGC 3 cut(s) 85, 290, 319
BcnI CCSGG 1 cut(s) 93
BisI GCNGC 5 cut(s) 142, 207, 233, 255, 351
BlsI GCNGC 5 cut(s) 143, 208, 234, 256, 352
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 2 cut(s) 176, 387
BmgT120I GGNCC 3 cut(s) 176, 332, 387
BmiI GGNNCC 2 cut(s) 326, 388
BmrFI CCNGG 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 328, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 3 cut(s) 49, 136, 399
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 328, 335
BseGI GGATG 2 cut(s) 29, 202
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 49, 136, 399
BseXI GCAGC 2 cut(s) 219, 241
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 296
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 3 cut(s) 151, 166, 377
BspACI CCGC 5 cut(s) 5, 141, 206, 222, 350
BspANI GGCC 1 cut(s) 334
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 326, 388
BspPI GGATC 3 cut(s) 159, 174, 385
BsrI ACTGG 3 cut(s) 49, 136, 399
BssECI CCNNGG 2 cut(s) 328, 335
BssMI GATC 3 cut(s) 151, 166, 377
BssT1I CCWWGG 1 cut(s) 328
BstAPI GCANNNNNTGC 2 cut(s) 125, 215
BstC8I GCNNGC 6 cut(s) 220, 252, 259, 263, 307, 311
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 29, 202
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 2 cut(s) 74, 206
BstKTI GATC 3 cut(s) 154, 169, 380
BstMBI GATC 3 cut(s) 151, 166, 377
BstMWI GCNNNNNNNGC 5 cut(s) 125, 215, 302, 331, 347
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 91
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 219, 241
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 3 cut(s) 151, 166, 377
BstYI RGATCY 3 cut(s) 151, 166, 377
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 29, 202
BtsIMutI CAGTG 3 cut(s) 129, 353, 406
Cac8I GCNNGC 6 cut(s) 220, 252, 259, 263, 307, 311
CfoI GCGC 2 cut(s) 74, 206
Cfr13I GGNCC 3 cut(s) 176, 332, 387
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 306
CviJI RGCY 9 cut(s) 41, 232, 254, 261, 265, 325, 334, 341, 373
CviKI_1 RGCY 9 cut(s) 41, 232, 254, 261, 265, 325, 334, 341, 373
CviQI GTAC 1 cut(s) 64
DpnI GATC 3 cut(s) 153, 168, 379
DpnII GATC 3 cut(s) 151, 166, 377
DraIII CACNNNGTG 1 cut(s) 215
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 176, 387
EcoRV GATATC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 309
FaiI YATR 7 cut(s) 61, 86, 138, 191, 214, 307, 412
FatI CATG 1 cut(s) 305
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 5 cut(s) 142, 207, 233, 255, 351
FokI GGATG 2 cut(s) 16, 209
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 5 cut(s) 142, 207, 233, 255, 351
GlaI GCGC 2 cut(s) 73, 205
GluI GCNGC 5 cut(s) 142, 207, 233, 255, 351
GsaI CCCAGC 1 cut(s) 377
HaeIII GGCC 1 cut(s) 334
HapII CCGG 1 cut(s) 92
HhaI GCGC 2 cut(s) 74, 206
Hin1II CATG 1 cut(s) 309
Hin6I GCGC 2 cut(s) 72, 204
HinP1I GCGC 2 cut(s) 72, 204
HinfI GANTC 1 cut(s) 286
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 2 cut(s) 54, 174
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 2 cut(s) 71, 83
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 119, 309
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 215, 302, 331, 347
Hsp92II CATG 1 cut(s) 309
HspAI GCGC 2 cut(s) 72, 204
Kzo9I GATC 3 cut(s) 151, 166, 377
LmnI GCTCC 2 cut(s) 229, 330
Lsp1109I GCAGC 2 cut(s) 219, 241
LweI GCATC 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 343
MalI GATC 3 cut(s) 153, 168, 379
MboI GATC 3 cut(s) 151, 166, 377
MboII GAAGA 2 cut(s) 116, 119
MflI RGATCY 3 cut(s) 151, 166, 377
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 1 cut(s) 424
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 2 cut(s) 12, 194
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 58
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 5 cut(s) 125, 215, 302, 331, 347
NciI CCSGG 1 cut(s) 93
NdeII GATC 3 cut(s) 151, 166, 377
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 2 cut(s) 326, 388
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 309
PaeI GCATGC 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PkrI GCNGC 5 cut(s) 143, 208, 234, 256, 352
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 326, 388
PspPI GGNCC 3 cut(s) 176, 332, 387
PsuI RGATCY 3 cut(s) 151, 166, 377
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 58
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 5 cut(s) 142, 207, 233, 255, 351
Sau3AI GATC 3 cut(s) 151, 166, 377
Sau96I GGNCC 3 cut(s) 176, 332, 387
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 327
SetI ASST 2 cut(s) 234, 256
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 2 cut(s) 176, 387
SmiMI CAYNNNNRTG 1 cut(s) 58
SphI GCATGC 1 cut(s) 309
Sse9I AATT 1 cut(s) 424
SsiI CCGC 5 cut(s) 5, 141, 206, 222, 350
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 328
TaqI TCGA 2 cut(s) 81, 123
TasI AATT 1 cut(s) 424
TauI GCSGC 3 cut(s) 144, 209, 353
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 3 cut(s) 136, 360, 406
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 2 cut(s) 232, 254
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 18, 206
TspRI CASTG 3 cut(s) 136, 360, 406
VpaK11BI GGWCC 2 cut(s) 176, 387
XceI RCATGY 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.