Rh6AG130500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004556
Physical Location & Seq
Forward (+)
19714883 .. 19715092
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG130500.1

Sequence Viewer

Length: 210 bp
ATGCAGAATTCCTGTCTTGAACTCGGCAAAGGCGATGACACTGGGTATGGCGGTAGTGTTGATCTTGGGTCCTTGGGATTTGATCTATTCGGATCGGAGACCAATGCGAAGGATGGAGGCACGCCACTACAAGCATGTGACGGTGCTGTCACGATGGGGCTGCTGATGTCAATGAAGCTGGATGCTGGTGGCGGATTTTCATGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

6.92

Weight (kDa)

4.05

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AciI CCGC 2 cut(s) 51, 192
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 7
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 69
AvaII GGWCC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 147
BccI CCATC 2 cut(s) 107, 148
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcoDI GTCTC 1 cut(s) 92
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 118, 187
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 61, 82, 92
BspACI CCGC 2 cut(s) 51, 192
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 3 cut(s) 61, 82, 92
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 122
BstF5I GGATG 2 cut(s) 118, 187
BstKTI GATC 3 cut(s) 64, 85, 95
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 61, 82, 92
BstNSI RCATGY 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 118, 187
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 69
CviAII CATG 2 cut(s) 135, 201
CviJI RGCY 3 cut(s) 160, 178, 206
CviKI_1 RGCY 3 cut(s) 160, 178, 206
DpnI GATC 3 cut(s) 63, 84, 94
DpnII GATC 3 cut(s) 61, 82, 92
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 138, 204
FaiI YATR 3 cut(s) 48, 136, 202
FatI CATG 2 cut(s) 134, 200
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 2 cut(s) 125, 194
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
Hin1II CATG 2 cut(s) 138, 204
Hpy188I TCNGA 2 cut(s) 92, 97
Hpy188III TCNNGA 2 cut(s) 17, 151
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 2 cut(s) 138, 204
Kzo9I GATC 3 cut(s) 61, 82, 92
LpnPI CCDG 4 cut(s) 25, 27, 164, 171
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 137, 148
MalI GATC 3 cut(s) 63, 84, 94
MboI GATC 3 cut(s) 61, 82, 92
MluCI AATT 1 cut(s) 7
MnlI CCTC 1 cut(s) 110
NdeII GATC 3 cut(s) 61, 82, 92
NlaIII CATG 2 cut(s) 138, 204
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 137, 148
NspI RCATGY 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PkrI GCNGC 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 69
PspPPI RGGWCCY 1 cut(s) 69
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 61, 82, 92
Sau96I GGNCC 1 cut(s) 69
SetI ASST 1 cut(s) 180
SfaNI GCATC 1 cut(s) 172
SinI GGWCC 1 cut(s) 69
Sse9I AATT 1 cut(s) 7
SsiI CCGC 2 cut(s) 51, 192
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 143
TasI AATT 1 cut(s) 7
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 2 cut(s) 137, 148
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 2 cut(s) 137, 148
TspDTI ATGAA 2 cut(s) 188, 189
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 69
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.