Rh6BG127800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004556
Physical Location & Seq
Forward (+)
19917728 .. 19918054
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG127800.1

Sequence Viewer

Length: 327 bp
ATGGTCGGACCGCCCCCTTGGGATGGTTGCTTCCCATCTGATCTTATCTGGACGGGGCTGCCTTTTGCCTTCTCTTCTAATTCTAGGCGGCTACCGTATCTGAATCTGAATCAAGGAATGCAGAATTCTTGTCTCGAACTTGGCAAAGGCGATGCCACTGGGTATGGCGGTAGTGTTGATCTTGGGTCCTTGGGGTTTGATCTATTCGGATCAGAGACCAATGCGAAGGATGGAGGCGCGCCACTACAAGCATGTGATGGTGCTGTTGCGATGGGGCTGCTGATGTCAATGAAGCTGGCTGCTGGTGGCGGATTTTCATGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.11

Weight (kDa)

4.27

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 239
AciI CCGC 4 cut(s) 11, 88, 168, 309
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 2 cut(s) 137, 209
AlwI GGATC 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 58, 277, 299
ApoI RAATTY 1 cut(s) 124
AscI GGCGCGCC 1 cut(s) 237
AspLEI GCGC 2 cut(s) 239, 241
AspS9I GGNCC 2 cut(s) 8, 186
AvaII GGWCC 2 cut(s) 8, 186
BbvI GCAGC 3 cut(s) 45, 264, 286
BccI CCATC 5 cut(s) 17, 43, 224, 251, 265
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BcoDI GTCTC 2 cut(s) 137, 209
BfaI CTAG 1 cut(s) 84
BisI GCNGC 4 cut(s) 59, 89, 278, 300
BlsI GCNGC 4 cut(s) 60, 90, 279, 301
Bme18I GGWCC 2 cut(s) 8, 186
BmgT120I GGNCC 2 cut(s) 8, 186
BmiI GGNNCC 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 17, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 17, 189
BseGI GGATG 2 cut(s) 28, 235
BseLI CCNNNNNNNGG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 163
BsePI GCGCGC 1 cut(s) 237
BseXI GCAGC 3 cut(s) 45, 264, 286
Bsh1236I CGCG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 137, 209
BsmI GAATGC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 40, 178, 199, 209
BspACI CCGC 4 cut(s) 11, 88, 168, 309
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 17, 189
BssHII GCGCGC 1 cut(s) 237
BssMI GATC 4 cut(s) 40, 178, 199, 209
BssT1I CCWWGG 2 cut(s) 17, 189
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 239, 297
BstF5I GGATG 2 cut(s) 28, 235
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 2 cut(s) 239, 241
BstKTI GATC 4 cut(s) 43, 181, 202, 212
BstMAI GTCTC 2 cut(s) 137, 209
BstMBI GATC 4 cut(s) 40, 178, 199, 209
BstNSI RCATGY 1 cut(s) 255
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 3 cut(s) 45, 264, 286
BtgZI GCGATG 2 cut(s) 165, 284
BtsCI GGATG 2 cut(s) 28, 235
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 239, 297
CfoI GCGC 2 cut(s) 239, 241
Cfr13I GGNCC 2 cut(s) 8, 186
CpoI CGGWCCG 1 cut(s) 8
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 2 cut(s) 252, 318
CviJI RGCY 6 cut(s) 58, 91, 277, 295, 299, 323
CviKI_1 RGCY 6 cut(s) 58, 91, 277, 295, 299, 323
DpnI GATC 4 cut(s) 42, 180, 201, 211
DpnII GATC 4 cut(s) 40, 178, 199, 209
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 17, 189
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 8, 186
EcoO109I RGGNCCY 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 17, 189
ErhI CCWWGG 2 cut(s) 17, 189
FaeI CATG 2 cut(s) 255, 321
FaiI YATR 3 cut(s) 165, 253, 319
FatI CATG 2 cut(s) 251, 317
Fnu4HI GCNGC 4 cut(s) 59, 89, 278, 300
FokI GGATG 2 cut(s) 35, 242
Fsp4HI GCNGC 4 cut(s) 59, 89, 278, 300
FspBI CTAG 1 cut(s) 84
GlaI GCGC 2 cut(s) 238, 240
GluI GCNGC 4 cut(s) 59, 89, 278, 300
HhaI GCGC 2 cut(s) 239, 241
Hin1II CATG 2 cut(s) 255, 321
Hin6I GCGC 2 cut(s) 237, 239
HinP1I GCGC 2 cut(s) 237, 239
HinfI GANTC 2 cut(s) 103, 109
Hpy188I TCNGA 6 cut(s) 8, 40, 102, 108, 209, 214
Hpy188III TCNNGA 2 cut(s) 49, 134
HpyAV CCTTC 2 cut(s) 79, 220
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 121
Hsp92II CATG 2 cut(s) 255, 321
HspAI GCGC 2 cut(s) 237, 239
Kzo9I GATC 4 cut(s) 40, 178, 199, 209
LpnPI CCDG 4 cut(s) 34, 144, 281, 288
Lsp1109I GCAGC 3 cut(s) 45, 264, 286
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 84
MalI GATC 4 cut(s) 42, 180, 201, 211
MboI GATC 4 cut(s) 40, 178, 199, 209
MboII GAAGA 1 cut(s) 66
MluCI AATT 2 cut(s) 79, 124
MnlI CCTC 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 123
MvnI CGCG 1 cut(s) 239
NdeII GATC 4 cut(s) 40, 178, 199, 209
NlaIII CATG 2 cut(s) 255, 321
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 255
PalAI GGCGCGCC 1 cut(s) 237
PauI GCGCGC 1 cut(s) 237
PctI GAATGC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 103, 109
PkrI GCNGC 4 cut(s) 60, 90, 279, 301
PpuMI RGGWCCY 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 8, 186
PspPPI RGGWCCY 1 cut(s) 186
PteI GCGCGC 1 cut(s) 237
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SatI GCNGC 4 cut(s) 59, 89, 278, 300
Sau3AI GATC 4 cut(s) 40, 178, 199, 209
Sau96I GGNCC 2 cut(s) 8, 186
SetI ASST 1 cut(s) 297
SfaNI GCATC 1 cut(s) 142
SgsI GGCGCGCC 1 cut(s) 237
SinI GGWCC 2 cut(s) 8, 186
Sse9I AATT 2 cut(s) 79, 124
SsiI CCGC 4 cut(s) 11, 88, 168, 309
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 17, 189
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 79, 124
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 2 cut(s) 103, 109
TscAI CASTG 1 cut(s) 163
TseI GCWGC 3 cut(s) 58, 277, 299
TspDTI ATGAA 2 cut(s) 305, 306
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 8, 186
XapI RAATTY 1 cut(s) 124
XceI RCATGY 1 cut(s) 255
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.