Rroxscaffold_5G00349020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004556
Physical Location & Seq
Reverse (-)
21611628 .. 21612527
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349020.1

Sequence Viewer

Length: 411 bp
ATGGAGGCTCTCGGTGAACTGCATCAGTCTGGTGCCTCTGGCAATCTTAGGGAGTGGTCTCGAGTTGTTAAGTTTTCAGGCGTTTTGGAGTTTCACGGTGGTCCACATTGGAGTGATGGGGCTTCGGGTAGCAGCGGTGACGGCGGCGCTGGAAGGGATGGTGCGGAGCGGCGGCATGTGCAGATGATGACGTCTTGGGCCGGGTTGGGCTGGTTTGCTAGGGCTTGGGTGATGGTGTCCTTGGGCTGTTGCTTTTGGGCCCGGTTGTTTTCGGCTTGCATTTTGTTAGTAGCTTTGTTTACTTCCAATAATCCCCTTAGTCTTTTTAGGGACCCATGCACTTTTTGTGCTTCTAGCGGATCTTCGGGAGTAGTACAGAAGGAAGATTCATACTATTTCGAATGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.68

Weight (kDa)

6.04

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 169
AciI CCGC 6 cut(s) 135, 144, 164, 169, 172, 357
AclWI GGATC 1 cut(s) 367
AcyI GRCGYC 1 cut(s) 191
AfaI GTAC 1 cut(s) 375
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 198, 258
ApaI GGGCCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 5 cut(s) 101, 198, 258, 259, 331
AsuC2I CCSGG 2 cut(s) 202, 262
AsuHPI GGTGA 3 cut(s) 26, 149, 241
AsuII TTCGAA 1 cut(s) 399
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 101, 331
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 144
BccI CCATC 3 cut(s) 110, 152, 226
BceAI ACGGC 1 cut(s) 157
BcnI CCSGG 2 cut(s) 202, 262
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 219, 354
BfoI RGCGCY 1 cut(s) 150
BisI GCNGC 4 cut(s) 133, 145, 170, 173
BlsI GCNGC 4 cut(s) 134, 146, 171, 174
Bme1390I CCNGG 2 cut(s) 202, 262
Bme18I GGWCC 2 cut(s) 101, 331
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 5 cut(s) 101, 198, 258, 259, 331
BmiI GGNNCC 4 cut(s) 34, 260, 332, 333
BmrFI CCNGG 2 cut(s) 202, 262
BmsI GCATC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 202, 262
BsaHI GRCGYC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 2 cut(s) 200, 260
BshNI GGYRCC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 201, 262
BslFI GGGAC 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 2 cut(s) 200, 260
Bso31I GGTCTC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 399
Bsp120I GGGCCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 359
BspACI CCGC 6 cut(s) 135, 144, 164, 169, 172, 357
BspANI GGCC 2 cut(s) 200, 260
BspLI GGNNCC 4 cut(s) 34, 260, 332, 333
BspPI GGATC 1 cut(s) 367
BspT104I TTCGAA 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 359
BssNI GRCGYC 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 2 cut(s) 47, 317
BstF5I GGATG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 1 cut(s) 362
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 2 cut(s) 141, 178
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 200, 260
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 2 cut(s) 200, 260
BtsCI GGATG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 5 cut(s) 101, 198, 258, 259, 331
Csp6I GTAC 1 cut(s) 374
CviAII CATG 2 cut(s) 176, 336
CviJI RGCY 9 cut(s) 8, 122, 200, 210, 224, 246, 260, 275, 293
CviKI_1 RGCY 9 cut(s) 8, 122, 200, 210, 224, 246, 260, 275, 293
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 2 cut(s) 47, 317
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 101, 331
Eco88I CYCGRG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 179, 339
FaiI YATR 3 cut(s) 177, 337, 391
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 175, 335
Fnu4HI GCNGC 4 cut(s) 133, 145, 170, 173
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 4 cut(s) 133, 145, 170, 173
FspBI CTAG 2 cut(s) 219, 354
GlaI GCGC 1 cut(s) 148
GluI GCNGC 4 cut(s) 133, 145, 170, 173
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 2 cut(s) 200, 260
HapII CCGG 2 cut(s) 201, 262
HhaI GCGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 2 cut(s) 179, 339
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 1 cut(s) 386
HpaII CCGG 2 cut(s) 201, 262
HphI GGTGA 3 cut(s) 26, 149, 241
Hpy166II GTNNAC 3 cut(s) 17, 104, 300
Hpy188III TCNNGA 2 cut(s) 60, 366
Hpy8I GTNNAC 3 cut(s) 17, 104, 300
HpyAV CCTTC 2 cut(s) 147, 373
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 4 cut(s) 22, 181, 279, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 178
HpyF3I CTNAG 2 cut(s) 47, 317
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 2 cut(s) 179, 339
HspAI GCGC 1 cut(s) 147
KflI GGGWCCC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 15, 24, 63, 135, 196, 214, 275
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 31
MaeI CTAG 2 cut(s) 219, 354
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 361
MbiI CCGCTC 1 cut(s) 169
MboI GATC 1 cut(s) 359
MboII GAAGA 2 cut(s) 354, 395
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 262
MnlI CCTC 1 cut(s) 46
MseI TTAA 2 cut(s) 69, 409
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 2 cut(s) 201, 262
MspR9I CCNGG 2 cut(s) 202, 262
MwoI GCNNNNNNNGC 2 cut(s) 141, 178
NciI CCSGG 2 cut(s) 202, 262
NdeII GATC 1 cut(s) 359
NlaIII CATG 2 cut(s) 179, 339
NlaIV GGNNCC 4 cut(s) 34, 260, 332, 333
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 179
NspV TTCGAA 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 60
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 4 cut(s) 134, 146, 171, 174
PpuMI RGGWCCY 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 331
PspN4I GGNNCC 4 cut(s) 34, 260, 332, 333
PspOMI GGGCCC 1 cut(s) 258
PspPI GGNCC 5 cut(s) 101, 198, 258, 259, 331
PspPPI RGGWCCY 1 cut(s) 331
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 2 cut(s) 69, 409
SatI GCNGC 4 cut(s) 133, 145, 170, 173
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 5 cut(s) 101, 198, 258, 259, 331
ScrFI CCNGG 2 cut(s) 202, 262
SduI GDGCHC 1 cut(s) 262
SetI ASST 2 cut(s) 194, 295
SfaNI GCATC 1 cut(s) 31
Sfr274I CTCGAG 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 399
SinI GGWCC 2 cut(s) 101, 331
SlaI CTCGAG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SsiI CCGC 6 cut(s) 135, 144, 164, 169, 172, 357
SspMI CTAG 2 cut(s) 219, 354
StyD4I CCNGG 2 cut(s) 200, 260
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 61, 399
TatI WGTACW 1 cut(s) 373
TauI GCSGC 3 cut(s) 147, 172, 175
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 69, 409
Tru9I TTAA 2 cut(s) 69, 409
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 101, 331
XceI RCATGY 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 60
XspI CTAG 2 cut(s) 219, 354
ZraI GACGTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.