Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Reverse (-)

16426109 .. 16426693

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG156200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGACTGGCTTTTGCCTTGTCTTCCAATTCTAGGCGGTTGCCGTATCTTAATCTAAATCAAGGAATGCAGAATTCCCGTCCCGAACTCAGTCTCCAGAAGATGTGCAAAGGCGATGCCACTGGGTATGGCGGCAGTGTTGATCTTGGGTCCTCGGGGTTTGATCTGTTCGGACAGGAGACTAATGTGAAGGATGGAGGCGCGCTACTAGAAGCATGTGACGGTGCTGTCACTGTGGGGCTGCTGATGTCGGCGAAGCTGGCTGCTGGTGGCAGATTTTCATGGGCTCGGGTACATAACTGGATCTGGGTGTCCAGATCATTGTGGCAAGCGTTGTGCCACTTTTGGGCTCCTATCCGAGCCCAGCTGTCGGTGGCTTCGACGACGGAGACTGTGGAATTACCGTCGACTATGTCAGCGTTCAAATCATGGCTGGTTGAACAGCCGATGGCGACTCTGGTGGTGGAGGAAGCATGCTGGTGGGTCATAGGGCTTCTTGGGCAGCTGGTTGGGACTGCAGCACTGAAATCACTTTTTGGGCCGGAATCTCTTGGGTCCAGAATGAGCATTGGGTTTTTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

20.95

Weight (kDa)

6.72

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	407
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	37, 132
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	33, 346, 370
AgsI	TTSAA	2 cut(s)	424, 440
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	259, 367, 505
AluI	AGCT	3 cut(s)	259, 367, 505
Alw26I	GTCTC	3 cut(s)	98, 173, 383
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	2 cut(s)	154, 288
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	4 cut(s)	241, 263, 502, 518
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	203, 205
AspS9I	GGNCC	3 cut(s)	150, 539, 555
AvaI	CYCGRG	2 cut(s)	154, 288
AvaII	GGWCC	2 cut(s)	150, 555
BanII	GRGCYC	3 cut(s)	289, 352, 364
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	228, 250, 514, 530
BccI	CCATC	2 cut(s)	188, 442
BceAI	ACGGC	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	98, 173, 383
BfaI	CTAG	3 cut(s)	33, 209, 583
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	5 cut(s)	133, 242, 264, 503, 519
BlsI	GCNGC	5 cut(s)	134, 243, 265, 504, 520
Bme18I	GGWCC	2 cut(s)	150, 555
BmeT110I	CYCGRG	2 cut(s)	154, 288
BmgT120I	GGNCC	3 cut(s)	150, 539, 555
BmiI	GGNNCC	3 cut(s)	151, 351, 556
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 346, 370
Bse1I	ACTGG	3 cut(s)	12, 127, 305
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	3 cut(s)	33, 346, 370
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	3 cut(s)	12, 127, 305
BsePI	GCGCGC	1 cut(s)	201
BseXI	GCAGC	4 cut(s)	228, 250, 514, 530
BseYI	CCCAGC	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	541
BsiHKCI	CYCGRG	2 cut(s)	154, 288
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	3 cut(s)	18, 66, 526
BslI	CCNNNNNNNGG	3 cut(s)	33, 346, 370
BsmAI	GTCTC	3 cut(s)	98, 173, 383
BsmFI	GGGAC	3 cut(s)	18, 66, 526
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	541
BsoBI	CYCGRG	2 cut(s)	154, 288
Bsp1286I	GDGCHC	3 cut(s)	289, 352, 364
Bsp143I	GATC	4 cut(s)	142, 163, 303, 317
BspACI	CCGC	2 cut(s)	37, 132
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	3 cut(s)	151, 351, 556
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	12, 127, 305
BssECI	CCNNGG	1 cut(s)	153
BssHII	GCGCGC	1 cut(s)	201
BssMI	GATC	4 cut(s)	142, 163, 303, 317
Bst4CI	ACNGT	4 cut(s)	224, 235, 394, 405
BstC8I	GCNNGC	4 cut(s)	203, 261, 330, 475
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	203, 205
BstKTI	GATC	4 cut(s)	145, 166, 306, 320
BstMAI	GTCTC	3 cut(s)	98, 173, 383
BstMBI	GATC	4 cut(s)	142, 163, 303, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 499
BstNSI	RCATGY	2 cut(s)	219, 477
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	4 cut(s)	228, 250, 514, 530
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	4 cut(s)	120, 142, 231, 521
Cac8I	GCNNGC	4 cut(s)	203, 261, 330, 475
CfoI	GCGC	2 cut(s)	203, 205
Cfr13I	GGNCC	3 cut(s)	150, 539, 555
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	4 cut(s)	216, 282, 429, 474
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	144, 165, 305, 319
DpnII	GATC	4 cut(s)	142, 163, 303, 317
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eco24I	GRGCYC	3 cut(s)	289, 352, 364
Eco47I	GGWCC	2 cut(s)	150, 555
Eco88I	CYCGRG	2 cut(s)	154, 288
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	73
EcoT38I	GRGCYC	3 cut(s)	289, 352, 364
FaeI	CATG	4 cut(s)	219, 285, 432, 477
FaiI	YATR	8 cut(s)	129, 217, 283, 297, 413, 430, 475, 488
FaqI	GGGAC	3 cut(s)	18, 66, 526
FatI	CATG	4 cut(s)	215, 281, 428, 473
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	5 cut(s)	133, 242, 264, 503, 519
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	3 cut(s)	289, 352, 364
Fsp4HI	GCNGC	5 cut(s)	133, 242, 264, 503, 519
FspBI	CTAG	3 cut(s)	33, 209, 583
GlaI	GCGC	2 cut(s)	202, 204
GluI	GCNGC	5 cut(s)	133, 242, 264, 503, 519
GsaI	CCCAGC	1 cut(s)	367
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	2 cut(s)	203, 205
Hin1II	CATG	4 cut(s)	219, 285, 432, 477
Hin6I	GCGC	2 cut(s)	201, 203
HinP1I	GCGC	2 cut(s)	201, 203
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	2 cut(s)	454, 545
HpaII	CCGG	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	2 cut(s)	173, 359
Hpy188III	TCNNGA	4 cut(s)	83, 97, 315, 558
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	3 cut(s)	385, 388, 409
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	4 cut(s)	224, 235, 394, 405
HpyCH4V	TGCA	3 cut(s)	70, 108, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 499
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	4 cut(s)	219, 285, 432, 477
HspAI	GCGC	2 cut(s)	201, 203
Kzo9I	GATC	4 cut(s)	142, 163, 303, 317
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	4 cut(s)	228, 250, 514, 530
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	3 cut(s)	33, 209, 583
MaeIII	GTNAC	2 cut(s)	218, 229
MalI	GATC	4 cut(s)	144, 165, 305, 319
MboI	GATC	4 cut(s)	142, 163, 303, 317
MboII	GAAGA	2 cut(s)	15, 112
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	289, 352, 364
MluCI	AATT	3 cut(s)	28, 73, 398
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	3 cut(s)	163, 191, 460
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	478
MspA1I	CMGCKG	2 cut(s)	367, 505
MspI	CCGG	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	72
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	260, 499
NdeII	GATC	4 cut(s)	142, 163, 303, 317
NlaIII	CATG	4 cut(s)	219, 285, 432, 477
NlaIV	GGNNCC	3 cut(s)	151, 351, 556
NmuCI	GTSAC	2 cut(s)	218, 229
NspI	RCATGY	2 cut(s)	219, 477
PaeI	GCATGC	1 cut(s)	477
PauI	GCGCGC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	545
PflFI	GACNNNGTC	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	134, 243, 265, 504, 520
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	151, 351, 556
PspPI	GGNCC	3 cut(s)	150, 539, 555
PspPPI	RGGWCCY	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	412
PteI	GCGCGC	1 cut(s)	201
PvuII	CAGCTG	2 cut(s)	367, 505
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	478
SalI	GTCGAC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	5 cut(s)	133, 242, 264, 503, 519
Sau3AI	GATC	4 cut(s)	142, 163, 303, 317
Sau96I	GGNCC	3 cut(s)	150, 539, 555
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	3 cut(s)	289, 352, 364
SetI	ASST	3 cut(s)	261, 369, 507
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	150, 555
SmiMI	CAYNNNNRTG	1 cut(s)	478
SphI	GCATGC	1 cut(s)	477
Sse9I	AATT	3 cut(s)	28, 73, 398
SsiI	CCGC	2 cut(s)	37, 132
SspMI	CTAG	3 cut(s)	33, 209, 583
TaaI	ACNGT	4 cut(s)	224, 235, 394, 405
TaqI	TCGA	2 cut(s)	380, 407
TasI	AATT	3 cut(s)	28, 73, 398
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	4 cut(s)	127, 142, 238, 528
TseFI	GTSAC	2 cut(s)	218, 229
TseI	GCWGC	4 cut(s)	241, 263, 502, 518
Tsp45I	GTSAC	2 cut(s)	218, 229
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	4 cut(s)	127, 142, 238, 528
Tth111I	GACNNNGTC	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	150, 555
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	2 cut(s)	219, 477
XmiI	GTMKAC	1 cut(s)	407
XspI	CTAG	3 cut(s)	33, 209, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.