Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Reverse (-)

26717505 .. 26717945

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG267400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTGGGTTCGGTGTGACGCTCATGTGGCTGCGATTCCTCATGGCTGCTGGAGGTTTGCGACTCTGGTACGACGGCGCAGTCGTCGTTATACGACCGGATTTTATTGAAGAAGATAGTGGTGTAGTCGATGCCACTGGTTCTGGCGGCGATGTGGATCTTGGGTCCTTGGGTTTTGATCTGTTTGGACCAGAAATCAATATGAAGGATGGAGGCGCGCCACTACGTGCTGGTGGGGTGGAGTTGCTGATATCGGTGAAGCGGACTACTGGATGGCTGGTTGAATGGTCGTCGGTGACTCCGATGGATGGAATAACATGTTGGCAGTTTCTTGGGCTCCTTGGGCCATGGGCTGCGACTGCAGCACTGAAATCAGGTTCTGGGCTGGGATCTCTTGGGTCCAGAATGAGCAGTGGCTTTTTATACCCTTTTATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.35

Weight (kDa)

4.47

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccII	CGCG	1 cut(s)	218
AciI	CCGC	2 cut(s)	147, 262
AclWI	GGATC	2 cut(s)	165, 397
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	110, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AlwI	GGATC	2 cut(s)	165, 397
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	4 cut(s)	31, 47, 353, 362
AscI	GGCGCGCC	1 cut(s)	216
AseI	ATTAAT	1 cut(s)	435
AspLEI	GCGC	3 cut(s)	80, 218, 220
AspS9I	GGNCC	4 cut(s)	165, 188, 344, 399
AsuHPI	GGTGA	2 cut(s)	268, 307
AvaII	GGWCC	3 cut(s)	165, 188, 399
BanII	GRGCYC	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	18, 34, 340, 374
BccI	CCATC	4 cut(s)	203, 267, 298, 302
BceAI	ACGGC	1 cut(s)	91
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	5 cut(s)	32, 48, 148, 354, 363
BlsI	GCNGC	5 cut(s)	33, 49, 149, 355, 364
Bme18I	GGWCC	3 cut(s)	165, 188, 399
BmgT120I	GGNCC	4 cut(s)	165, 188, 344, 399
BmiI	GGNNCC	3 cut(s)	166, 338, 400
BmsI	GCATC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	168, 340, 347
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	142, 274
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	168, 340, 347
BseGI	GGATG	3 cut(s)	214, 278, 313
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	142, 274
BsePI	GCGCGC	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	18, 34, 340, 374
BseYI	CCCAGC	2 cut(s)	5, 385
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	346
BsiEI	CGRYCG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	308
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	157, 178, 389
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	2 cut(s)	147, 262
BspANI	GGCC	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	3 cut(s)	166, 338, 400
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	165, 397
BsrI	ACTGG	2 cut(s)	142, 274
BssECI	CCNNGG	3 cut(s)	168, 340, 347
BssHII	GCGCGC	1 cut(s)	216
BssMI	GATC	3 cut(s)	157, 178, 389
BssT1I	CCWWGG	3 cut(s)	168, 340, 347
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	3 cut(s)	214, 278, 313
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	3 cut(s)	80, 218, 220
BstKTI	GATC	3 cut(s)	160, 181, 392
BstMBI	GATC	3 cut(s)	157, 178, 389
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 343, 359, 362
BstNSI	RCATGY	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	4 cut(s)	18, 34, 340, 374
BstX2I	RGATCY	2 cut(s)	157, 389
BstYI	RGATCY	2 cut(s)	157, 389
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	347
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	214, 278, 313
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	3 cut(s)	135, 365, 418
Cac8I	GCNNGC	1 cut(s)	218
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	3 cut(s)	80, 218, 220
Cfr13I	GGNCC	4 cut(s)	165, 188, 344, 399
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	4 cut(s)	25, 43, 318, 348
CviJI	RGCY	9 cut(s)	5, 31, 47, 277, 337, 346, 353, 385, 417
CviKI_1	RGCY	9 cut(s)	5, 31, 47, 277, 337, 346, 353, 385, 417
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	3 cut(s)	159, 180, 391
DpnII	GATC	3 cut(s)	157, 178, 389
DraIII	CACNNNGTG	1 cut(s)	227
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eco130I	CCWWGG	3 cut(s)	168, 340, 347
Eco24I	GRGCYC	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	3 cut(s)	165, 188, 399
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	3 cut(s)	168, 340, 347
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	3 cut(s)	168, 340, 347
FaeI	CATG	4 cut(s)	28, 46, 321, 351
FaiI	YATR	7 cut(s)	26, 44, 92, 203, 319, 349, 424
FatI	CATG	4 cut(s)	24, 42, 317, 347
Fnu4HI	GCNGC	5 cut(s)	32, 48, 148, 354, 363
FokI	GGATG	3 cut(s)	221, 285, 320
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	5 cut(s)	32, 48, 148, 354, 363
GlaI	GCGC	3 cut(s)	79, 217, 219
GluI	GCNGC	5 cut(s)	32, 48, 148, 354, 363
GsaI	CCCAGC	2 cut(s)	9, 389
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	3 cut(s)	80, 218, 220
Hin1II	CATG	4 cut(s)	28, 46, 321, 351
Hin6I	GCGC	3 cut(s)	78, 216, 218
HinP1I	GCGC	3 cut(s)	78, 216, 218
HinfI	GANTC	3 cut(s)	36, 63, 298
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	268, 307
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	1 cut(s)	402
Hpy99I	CGWCG	3 cut(s)	77, 89, 295
HpyAV	CCTTC	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 343, 359, 362
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	4 cut(s)	28, 46, 321, 351
HspAI	GCGC	3 cut(s)	78, 216, 218
Kzo9I	GATC	3 cut(s)	157, 178, 389
LmnI	GCTCC	1 cut(s)	342
Lsp1109I	GCAGC	4 cut(s)	18, 34, 340, 374
LweI	GCATC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	16, 295
MalI	GATC	3 cut(s)	159, 180, 391
MboI	GATC	3 cut(s)	157, 178, 389
MboII	GAAGA	2 cut(s)	122, 125
MflI	RGATCY	2 cut(s)	157, 389
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	1 cut(s)	436
MlyI	GAGTC	2 cut(s)	57, 292
MnlI	CCTC	3 cut(s)	47, 50, 206
MseI	TTAA	1 cut(s)	435
MspI	CCGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	28, 343, 359, 362
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	3 cut(s)	157, 178, 389
NlaIII	CATG	4 cut(s)	28, 46, 321, 351
NlaIV	GGNNCC	3 cut(s)	166, 338, 400
NmuCI	GTSAC	2 cut(s)	16, 295
NspI	RCATGY	1 cut(s)	321
PalAI	GGCGCGCC	1 cut(s)	216
PauI	GCGCGC	1 cut(s)	216
PciI	ACATGT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 299
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	33, 49, 149, 355, 364
PleI	GAGTC	2 cut(s)	57, 292
PpsI	GAGTC	2 cut(s)	57, 292
Ppu21I	YACGTR	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	165
PscI	ACATGT	1 cut(s)	317
PshBI	ATTAAT	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	165
PspFI	CCCAGC	2 cut(s)	5, 385
PspN4I	GGNNCC	3 cut(s)	166, 338, 400
PspPI	GGNCC	4 cut(s)	165, 188, 344, 399
PspPPI	RGGWCCY	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	157, 389
PteI	GCGCGC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	5 cut(s)	32, 48, 148, 354, 363
Sau3AI	GATC	3 cut(s)	157, 178, 389
Sau96I	GGNCC	4 cut(s)	165, 188, 344, 399
SchI	GAGTC	2 cut(s)	57, 292
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	3 cut(s)	58, 229, 379
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	360
SgsI	GGCGCGCC	1 cut(s)	216
SinI	GGWCC	3 cut(s)	165, 188, 399
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	2 cut(s)	147, 262
StyI	CCWWGG	3 cut(s)	168, 340, 347
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	436
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	3 cut(s)	142, 372, 418
TseFI	GTSAC	2 cut(s)	16, 295
TseI	GCWGC	4 cut(s)	31, 47, 353, 362
Tsp45I	GTSAC	2 cut(s)	16, 295
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	142, 372, 418
VpaK11BI	GGWCC	3 cut(s)	165, 188, 399
VspI	ATTAAT	1 cut(s)	435
XceI	RCATGY	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.