Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Forward (+)

2771462 .. 2772869

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTGGGATTGGTGTGACGCTCATGTGGCTGCAATTCCCGGAGGCTGCTAGGGGTTCACGACTATGGTACAACGACTCAATCGTCAACATAAGACCAGGTTTTATTGAAGAAGATAGTGGTGCAATCGATGCCATTGGTTATGGAGGCGATGTGGATCTTGGGTCCTTGGGTTTTGCTCTGTTTGGACTAGCTAGAAATCAATATGAAGGATGGAGGCGCGCCACTACGTGCTGGCGGGGTAAAGCTGCTGATATCGGTGAAGCGGGCTGCTGGATGGCTGGTCGATTGGCCGTCGGCGACTCCGATGGCAAGAATAGCATGCTGGCGGTTTCTTGGGCTCCTTGGGCTGTGGGCTGCGACTGCGGCACTGAAATCAAGTTCTGGGCCGGGATCTCTTGGGTCCAGAATGAGCAGTGGGGGTTGGCTGCTGTGCATCTGGGATCGGTGATGGCGATGGAGGCTCTCGGTGAATCTGCATCGATCTGGAGTCTGAGTCATCTCATAGAGTGGCGTCTCAGGTTTGCTCAGTTTTCAGGCGTTTTGGAGTTTCACGGTGGTCGAAATTGGTGTGACGGGGCTTTGGGTAGCAGCGGGACAATGGCGCCGGACGAGATGGTGAGGGGCGGCGGCTCGTGCAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.12

Weight (kDa)

4.94

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	604
AccII	CGCG	1 cut(s)	222
AciI	CCGC	7 cut(s)	238, 266, 329, 366, 594, 627, 630
AclWI	GGATC	3 cut(s)	165, 401, 451
AcoI	YGGCCR	1 cut(s)	291
AcyI	GRCGYC	2 cut(s)	514, 605
AdeI	CACNNNGTG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	194, 248
AluI	AGCT	2 cut(s)	194, 248
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	3 cut(s)	165, 401, 451
AoxI	GGCC	2 cut(s)	291, 387
ApeKI	GCWGC	7 cut(s)	31, 47, 248, 270, 357, 428, 591
AscI	GGCGCGCC	1 cut(s)	220
AspLEI	GCGC	3 cut(s)	222, 224, 607
AspS9I	GGNCC	3 cut(s)	165, 387, 403
AsuC2I	CCSGG	2 cut(s)	41, 391
AsuHPI	GGTGA	4 cut(s)	272, 460, 482, 631
AvaII	GGWCC	2 cut(s)	165, 403
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	634
BbvI	GCAGC	7 cut(s)	18, 34, 235, 257, 344, 415, 603
BccI	CCATC	6 cut(s)	207, 271, 302, 445, 451, 610
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	99
BcnI	CCSGG	2 cut(s)	41, 391
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	3 cut(s)	51, 191, 195
BfoI	RGCGCY	1 cut(s)	608
Bme1390I	CCNGG	3 cut(s)	41, 99, 391
Bme18I	GGWCC	2 cut(s)	165, 403
BmgT120I	GGNCC	3 cut(s)	165, 387, 403
BmiI	GGNNCC	4 cut(s)	166, 342, 404, 606
BmrFI	CCNGG	3 cut(s)	41, 99, 391
BmsI	GCATC	3 cut(s)	121, 445, 488
BpmI	CTGGAG	1 cut(s)	508
BpuMI	CCSGG	2 cut(s)	41, 391
Bsa29I	ATCGAT	2 cut(s)	129, 482
BsaAI	YACGTR	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	514, 605
BsaJI	CCNNGG	2 cut(s)	168, 344
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 481, 511
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	99
BseCI	ATCGAT	2 cut(s)	129, 482
BseDI	CCNNGG	2 cut(s)	168, 344
BseGI	GGATG	2 cut(s)	218, 282
BseJI	GATNNNNATC	1 cut(s)	156
BseMII	CTCAG	3 cut(s)	485, 532, 542
BsePI	GCGCGC	1 cut(s)	220
BseXI	GCAGC	7 cut(s)	18, 34, 235, 257, 344, 415, 603
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	293, 389
BshNI	GGYRCC	1 cut(s)	604
BshVI	ATCGAT	2 cut(s)	129, 482
BsiSI	CCGG	3 cut(s)	41, 390, 608
BslFI	GGGAC	1 cut(s)	610
BsmAI	GTCTC	1 cut(s)	521
BsmBI	CGTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	293, 389
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	4 cut(s)	157, 393, 443, 483
BspACI	CCGC	7 cut(s)	238, 266, 329, 366, 594, 627, 630
BspANI	GGCC	2 cut(s)	293, 389
BspCNI	CTCAG	3 cut(s)	486, 531, 541
BspDI	ATCGAT	2 cut(s)	129, 482
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	166, 342, 404, 606
BspPI	GGATC	3 cut(s)	165, 401, 451
BspT107I	GGYRCC	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	168, 344
BssHII	GCGCGC	1 cut(s)	220
BssMI	GATC	4 cut(s)	157, 393, 443, 483
BssNI	GRCGYC	2 cut(s)	514, 605
BssSI	CACGAG	1 cut(s)	634
BssT1I	CCWWGG	2 cut(s)	168, 344
Bst2BI	CACGAG	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	557
BstACI	GRCGYC	2 cut(s)	514, 605
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	222, 236, 268, 323, 327
BstDEI	CTNAG	3 cut(s)	494, 518, 528
BstF5I	GGATG	2 cut(s)	218, 282
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	3 cut(s)	222, 224, 607
BstKTI	GATC	4 cut(s)	160, 396, 446, 486
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	4 cut(s)	157, 393, 443, 483
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 131, 318, 347, 363, 366, 461, 636
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	3 cut(s)	39, 97, 389
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	7 cut(s)	18, 34, 235, 257, 344, 415, 603
BstX2I	RGATCY	2 cut(s)	157, 393
BstYI	RGATCY	2 cut(s)	157, 393
Bsu15I	ATCGAT	2 cut(s)	129, 482
BsuRI	GGCC	2 cut(s)	293, 389
BsuTUI	ATCGAT	2 cut(s)	129, 482
BtgZI	GCGATG	2 cut(s)	165, 470
BtsCI	GGATG	2 cut(s)	218, 282
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	2 cut(s)	369, 422
Cac8I	GCNNGC	5 cut(s)	222, 236, 268, 323, 327
CfoI	GCGC	3 cut(s)	222, 224, 607
Cfr13I	GGNCC	3 cut(s)	165, 387, 403
ClaI	ATCGAT	2 cut(s)	129, 482
CseI	GACGC	2 cut(s)	28, 503
CsiI	ACCWGGT	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	25, 322
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	3 cut(s)	494, 518, 528
DinI	GGCGCC	1 cut(s)	606
DpnI	GATC	4 cut(s)	159, 395, 445, 485
DpnII	GATC	4 cut(s)	157, 393, 443, 483
DraIII	CACNNNGTG	1 cut(s)	231
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	168, 344
Eco24I	GRGCYC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	165, 403
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	168, 344
EcoT38I	GRGCYC	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	606
EheI	GGCGCC	1 cut(s)	606
ErhI	CCWWGG	2 cut(s)	168, 344
Esp3I	CGTCTC	1 cut(s)	521
FaeI	CATG	2 cut(s)	28, 325
FaiI	YATR	7 cut(s)	26, 67, 92, 144, 207, 323, 506
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	2 cut(s)	24, 321
FauI	CCCGC	3 cut(s)	231, 259, 587
FokI	GGATG	2 cut(s)	225, 289
FriOI	GRGCYC	1 cut(s)	343
FspBI	CTAG	3 cut(s)	51, 191, 195
GlaI	GCGC	3 cut(s)	221, 223, 606
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	293, 389
HapII	CCGG	3 cut(s)	41, 390, 608
HgaI	GACGC	2 cut(s)	28, 503
HhaI	GCGC	3 cut(s)	222, 224, 607
Hin1I	GRCGYC	2 cut(s)	514, 605
Hin1II	CATG	2 cut(s)	28, 325
Hin6I	GCGC	3 cut(s)	220, 222, 605
HinP1I	GCGC	3 cut(s)	220, 222, 605
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	5 cut(s)	77, 302, 473, 490, 496
HpaII	CCGG	3 cut(s)	41, 390, 608
HphI	GGTGA	4 cut(s)	272, 460, 482, 631
Hpy166II	GTNNAC	2 cut(s)	59, 88
Hpy188I	TCNGA	2 cut(s)	307, 495
Hpy188III	TCNNGA	3 cut(s)	60, 406, 487
Hpy8I	GTNNAC	2 cut(s)	59, 88
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	5 cut(s)	34, 125, 436, 479, 639
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 131, 318, 347, 363, 366, 461, 636
HpyF3I	CTNAG	3 cut(s)	494, 518, 528
HpySE526I	ACGT	1 cut(s)	230
Hsp92I	GRCGYC	2 cut(s)	514, 605
Hsp92II	CATG	2 cut(s)	28, 325
HspAI	GCGC	3 cut(s)	220, 222, 605
KasI	GGCGCC	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	157, 393, 443, 483
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	7 cut(s)	18, 34, 235, 257, 344, 415, 603
LweI	GCATC	3 cut(s)	121, 445, 488
MabI	ACCWGGT	1 cut(s)	97
MaeI	CTAG	3 cut(s)	51, 191, 195
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	16, 572
MalI	GATC	4 cut(s)	159, 395, 445, 485
MboI	GATC	4 cut(s)	157, 393, 443, 483
MboII	GAAGA	2 cut(s)	122, 125
MflI	RGATCY	2 cut(s)	157, 393
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	2 cut(s)	35, 565
Mly113I	GGCGCC	1 cut(s)	605
MlyI	GAGTC	4 cut(s)	71, 296, 499, 505
MnlI	CCTC	5 cut(s)	37, 140, 210, 454, 615
MslI	CAYNNNNRTG	1 cut(s)	64
MspA1I	CMGCKG	1 cut(s)	594
MspI	CCGG	3 cut(s)	41, 390, 608
MspR9I	CCNGG	3 cut(s)	41, 99, 391
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	8 cut(s)	28, 131, 318, 347, 363, 366, 461, 636
NarI	GGCGCC	1 cut(s)	605
NciI	CCSGG	2 cut(s)	41, 391
NdeII	GATC	4 cut(s)	157, 393, 443, 483
NlaIII	CATG	2 cut(s)	28, 325
NlaIV	GGNNCC	4 cut(s)	166, 342, 404, 606
NmuCI	GTSAC	2 cut(s)	16, 572
NspI	RCATGY	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	325
PalAI	GGCGCGCC	1 cut(s)	220
PauI	GCGCGC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 303, 452
PfeI	GAWTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	39
PleI	GAGTC	4 cut(s)	71, 296, 498, 504
PluTI	GGCGCC	1 cut(s)	608
PpsI	GAGTC	4 cut(s)	71, 296, 498, 504
Ppu21I	YACGTR	1 cut(s)	231
PpuMI	RGGWCCY	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	4 cut(s)	166, 342, 404, 606
PspPI	GGNCC	3 cut(s)	165, 387, 403
PspPPI	RGGWCCY	1 cut(s)	165
PsuI	RGATCY	2 cut(s)	157, 393
PteI	GCGCGC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	64
Sau3AI	GATC	4 cut(s)	157, 393, 443, 483
Sau96I	GGNCC	3 cut(s)	165, 387, 403
SchI	GAGTC	4 cut(s)	71, 296, 499, 505
ScrFI	CCNGG	3 cut(s)	41, 99, 391
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	5 cut(s)	103, 196, 233, 250, 524
SexAI	ACCWGGT	1 cut(s)	97
SfaNI	GCATC	3 cut(s)	121, 445, 488
SfoI	GGCGCC	1 cut(s)	606
SgsI	GGCGCGCC	1 cut(s)	220
SinI	GGWCC	2 cut(s)	165, 403
SmiMI	CAYNNNNRTG	1 cut(s)	64
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	2 cut(s)	35, 565
SsiI	CCGC	7 cut(s)	238, 266, 329, 366, 594, 627, 630
SspDI	GGCGCC	1 cut(s)	604
SspMI	CTAG	3 cut(s)	51, 191, 195
StyD4I	CCNGG	3 cut(s)	39, 97, 389
StyI	CCWWGG	2 cut(s)	168, 344
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	4 cut(s)	129, 286, 482, 562
TasI	AATT	2 cut(s)	35, 565
TauI	GCSGC	3 cut(s)	369, 630, 633
TfiI	GAWTC	1 cut(s)	473
TscAI	CASTG	2 cut(s)	376, 422
TseFI	GTSAC	2 cut(s)	16, 572
TseI	GCWGC	7 cut(s)	31, 47, 248, 270, 357, 428, 591
Tsp45I	GTSAC	2 cut(s)	16, 572
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	376, 422
VpaK11BI	GGWCC	2 cut(s)	165, 403
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	3 cut(s)	51, 191, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.