Rh7CG207200
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004556
Physical Location & Seq
Forward (+)
18516475 .. 18522821
6347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG207200.1

Sequence Viewer

Length: 516 bp
ATGGAGAACCTGATCTCGCTAGTCAACAAAATCCAAAGAGGTTGCACAGATCTCGGTGACCAAGGCGAAACTCGCGCATTACCGACTCTTTGGGACTCGCTTCCCTCCATCGCTGTCGTCGGTGGCCAGGTTCATTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGTCCCATAGGCTTACCATCAACAAGTATTCTGCTTTTGAAACCGCTGGGAAGCTTCCATGGGCGCTTAGCTGCTCCGGCCGGTTTCCAATATCAGGGCACCTTTGCCCTTCCATTGATCTACCTTTGCCAGATCTGACCCCTACTATTTACGATTATTATGGCGGCGGTCTTGTAGCTTTGTTAATTCGGGCTAGCAAAAGCCATGGCGGTGGTGAAAGGGTGGAACGCTTCATCCACGATGGTGACCTGGTTTCCTCATCCTGGTTGCCTCCTACAATTTCTGGGACCGGTGTGATGCCTATGTGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

171

Amino Acids

18.37

Weight (kDa)

7.77

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 175
AccII CGCG 1 cut(s) 75
AciI CCGC 4 cut(s) 246, 366, 369, 411
AcoI YGGCCR 2 cut(s) 124, 280
AfiI CCNNNNNNNGG 2 cut(s) 296, 465
AgeI ACCGGT 1 cut(s) 491
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 3 cut(s) 126, 450, 464
AleI CACNNNNGTG 1 cut(s) 444
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 3 cut(s) 256, 273, 380
AluI AGCT 3 cut(s) 256, 273, 380
AoxI GGCC 2 cut(s) 124, 280
ApeKI GCWGC 1 cut(s) 273
AsiGI ACCGGT 1 cut(s) 491
AspLEI GCGC 2 cut(s) 77, 268
AspS9I GGNCC 1 cut(s) 489
AsuHPI GGTGA 3 cut(s) 68, 428, 458
AsuNHI GCTAGC 1 cut(s) 395
AvaII GGWCC 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 303
BalI TGGCCA 1 cut(s) 126
BanI GGYRCC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 260
BccI CCATC 3 cut(s) 116, 227, 437
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 3 cut(s) 128, 452, 466
BfaI CTAG 2 cut(s) 20, 396
BfoI RGCGCY 1 cut(s) 269
BglII AGATCT 2 cut(s) 49, 334
BisI GCNGC 2 cut(s) 274, 367
BlpI GCTNAGC 1 cut(s) 269
BlsI GCNGC 2 cut(s) 275, 368
Bme1390I CCNGG 3 cut(s) 128, 452, 466
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 2 cut(s) 302, 490
BmrFI CCNGG 3 cut(s) 128, 452, 466
BmsI GCATC 1 cut(s) 489
BmtI GCTAGC 1 cut(s) 399
Bpu1102I GCTNAGC 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 61, 260, 406
BsaWI WCCGGW 1 cut(s) 491
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 465
Bse118I RCCGGY 2 cut(s) 282, 491
BseBI CCWGG 3 cut(s) 128, 452, 466
BseDI CCNNGG 3 cut(s) 61, 260, 406
BseGI GGATG 2 cut(s) 435, 461
BseLI CCNNNNNNNGG 2 cut(s) 296, 465
BseSI GKGCMC 1 cut(s) 303
BseX3I CGGCCG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 2 cut(s) 126, 282
BshNI GGYRCC 1 cut(s) 300
BshTI ACCGGT 1 cut(s) 491
BsiEI CGRYCG 1 cut(s) 283
BsiSI CCGG 3 cut(s) 279, 283, 492
BslFI GGGAC 3 cut(s) 107, 190, 502
BslI CCNNNNNNNGG 2 cut(s) 296, 465
BsmFI GGGAC 3 cut(s) 107, 190, 502
BsnI GGCC 2 cut(s) 126, 282
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 4 cut(s) 12, 49, 319, 334
Bsp1720I GCTNAGC 1 cut(s) 269
Bsp19I CCATGG 2 cut(s) 260, 406
BspACI CCGC 4 cut(s) 246, 366, 369, 411
BspANI GGCC 2 cut(s) 126, 282
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 302, 490
BspOI GCTAGC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 300
BsrFI RCCGGY 2 cut(s) 282, 491
BssAI RCCGGY 2 cut(s) 282, 491
BssECI CCNNGG 3 cut(s) 61, 260, 406
BssMI GATC 4 cut(s) 12, 49, 319, 334
BssT1I CCWWGG 3 cut(s) 61, 260, 406
Bst2UI CCWGG 3 cut(s) 128, 452, 466
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 1 cut(s) 269
BstDSI CCRYGG 2 cut(s) 260, 406
BstEII GGTNACC 2 cut(s) 56, 446
BstF5I GGATG 2 cut(s) 435, 461
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 77, 268
BstKTI GATC 4 cut(s) 15, 52, 322, 337
BstMBI GATC 4 cut(s) 12, 49, 319, 334
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 72, 279
BstNI CCWGG 3 cut(s) 128, 452, 466
BstPI GGTNACC 2 cut(s) 56, 446
BstSCI CCNGG 3 cut(s) 126, 450, 464
BstSLI GKGCMC 1 cut(s) 303
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 49, 334
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 2 cut(s) 49, 334
BstZI CGGCCG 1 cut(s) 280
BsuRI GGCC 2 cut(s) 126, 282
BtgI CCRYGG 2 cut(s) 260, 406
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 435, 461
Cac8I GCNNGC 1 cut(s) 397
CciI TCATGA 1 cut(s) 165
CfoI GCGC 2 cut(s) 77, 268
Cfr10I RCCGGY 2 cut(s) 282, 491
Cfr13I GGNCC 1 cut(s) 489
CsiI ACCWGGT 1 cut(s) 450
CspAI ACCGGT 1 cut(s) 491
CviAII CATG 3 cut(s) 166, 261, 407
CviJI RGCY 8 cut(s) 126, 214, 256, 273, 282, 380, 395, 405
CviKI_1 RGCY 8 cut(s) 126, 214, 256, 273, 282, 380, 395, 405
DdeI CTNAG 1 cut(s) 269
DpnI GATC 4 cut(s) 14, 51, 321, 336
DpnII GATC 4 cut(s) 12, 49, 319, 334
EaeI YGGCCR 2 cut(s) 124, 280
EagI CGGCCG 1 cut(s) 280
EclXI CGGCCG 1 cut(s) 280
Eco130I CCWWGG 3 cut(s) 61, 260, 406
Eco47I GGWCC 1 cut(s) 489
Eco52I CGGCCG 1 cut(s) 280
Eco91I GGTNACC 2 cut(s) 56, 446
EcoO65I GGTNACC 2 cut(s) 56, 446
EcoRII CCWGG 3 cut(s) 126, 450, 464
EcoT14I CCWWGG 3 cut(s) 61, 260, 406
ErhI CCWWGG 3 cut(s) 61, 260, 406
FaeI CATG 3 cut(s) 169, 264, 410
FaiI YATR 7 cut(s) 138, 167, 210, 262, 363, 408, 506
FaqI GGGAC 3 cut(s) 107, 190, 502
FatI CATG 3 cut(s) 165, 260, 406
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 274, 367
FokI GGATG 2 cut(s) 422, 448
Fsp4HI GCNGC 2 cut(s) 274, 367
FspBI CTAG 2 cut(s) 20, 396
GlaI GCGC 2 cut(s) 76, 267
GluI GCNGC 2 cut(s) 274, 367
GsaI CCCAGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 2 cut(s) 126, 282
HapII CCGG 3 cut(s) 279, 283, 492
HhaI GCGC 2 cut(s) 77, 268
Hin1II CATG 3 cut(s) 169, 264, 410
Hin6I GCGC 2 cut(s) 75, 266
HinP1I GCGC 2 cut(s) 75, 266
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 85, 95
HpaII CCGG 3 cut(s) 279, 283, 492
HphI GGTGA 3 cut(s) 68, 428, 458
Hpy166II GTNNAC 2 cut(s) 25, 176
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 25, 176
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 145, 321
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 45, 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 279
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 3 cut(s) 169, 264, 410
HspAI GCGC 2 cut(s) 75, 266
Kzo9I GATC 4 cut(s) 12, 49, 319, 334
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 1 cut(s) 489
MabI ACCWGGT 1 cut(s) 450
MaeI CTAG 2 cut(s) 20, 396
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 56, 446
MalI GATC 4 cut(s) 14, 51, 321, 336
MboI GATC 4 cut(s) 12, 49, 319, 334
MflI RGATCY 2 cut(s) 49, 334
MhlI GDGCHC 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 2 cut(s) 387, 480
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 2 cut(s) 79, 89
MnlI CCTC 5 cut(s) 32, 115, 191, 469, 483
Mox20I TGGCCA 1 cut(s) 126
MscI TGGCCA 1 cut(s) 126
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 3 cut(s) 164, 411, 444
Msp20I TGGCCA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 3 cut(s) 279, 283, 492
MspR9I CCNGG 3 cut(s) 128, 452, 466
MvaI CCWGG 3 cut(s) 128, 452, 466
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 72, 279
NcoI CCATGG 2 cut(s) 260, 406
NdeII GATC 4 cut(s) 12, 49, 319, 334
NheI GCTAGC 1 cut(s) 395
NlaIII CATG 3 cut(s) 169, 264, 410
NlaIV GGNNCC 2 cut(s) 302, 490
NmuCI GTSAC 2 cut(s) 56, 446
OliI CACNNNNGTG 1 cut(s) 444
PagI TCATGA 1 cut(s) 165
PinAI ACCGGT 1 cut(s) 491
PkrI GCNGC 2 cut(s) 275, 368
PleI GAGTC 2 cut(s) 79, 89
PpsI GAGTC 2 cut(s) 79, 89
Psp6I CCWGG 3 cut(s) 126, 450, 464
PspEI GGTNACC 2 cut(s) 56, 446
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 3 cut(s) 126, 450, 464
PspN4I GGNNCC 2 cut(s) 302, 490
PspPI GGNCC 1 cut(s) 489
PsuI RGATCY 2 cut(s) 49, 334
RseI CAYNNNNRTG 3 cut(s) 164, 411, 444
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 274, 367
Sau3AI GATC 4 cut(s) 12, 49, 319, 334
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 2 cut(s) 79, 89
ScrFI CCNGG 3 cut(s) 128, 452, 466
SduI GDGCHC 1 cut(s) 303
SexAI ACCWGGT 1 cut(s) 450
SfaNI GCATC 1 cut(s) 489
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 3 cut(s) 164, 411, 444
Sse9I AATT 2 cut(s) 387, 480
SsiI CCGC 4 cut(s) 246, 366, 369, 411
SspMI CTAG 2 cut(s) 20, 396
StyD4I CCNGG 3 cut(s) 126, 450, 464
StyI CCWWGG 3 cut(s) 61, 260, 406
TaiI ACGT 1 cut(s) 206
TasI AATT 2 cut(s) 387, 480
TauI GCSGC 1 cut(s) 369
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TseFI GTSAC 2 cut(s) 56, 446
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 2 cut(s) 56, 446
TspDTI ATGAA 3 cut(s) 122, 154, 424
VpaK11BI GGWCC 1 cut(s) 489
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 2 cut(s) 20, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.