Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Forward (+)

46489419 .. 46516028

Gene Structure 26610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG271000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGCTCCGATTTTGATTTCGTGACTGGCGAAGCCCAAGCAACCGGCGATCCTATCGGTTCAGATTGCGGCCTGAAAGTGAGGCGAGAAGCTGAATCGTGGAGCGGGCGCCTTTGCCCTTCACTTAATCTATTTTGGAAACATCTAATCCCTATCGGTTACTGTGGCGATGGTCCTAAGGCCCTGGTACTGTGGGCTGGAGAAAGCCAGGACGGCGGTGAAAGGGGGAAACGATTCATTCACGATGGTGACCCGATTTCCTTGTCCGGGTTGCCTCCTCCAATGGCTGGGATTGGTGGGATCGGTGTGCTAGTATGTGGTGGAGCCAACGGAGTTGTCGATGCCACTGATTATGGCGAAGGTATGGATCTGGGGTCCTTGAGTTTTGACCTAATCAGACTGGAGGTCAATATGAAGGATGGAGCCGCGCCACTACGTGCTATTGCGGTGGGACTGCTGCAGTCAGCAAAGCGGGCTATCGAAGGCGAATCATGGGATCAGAGGTACTTTGGTAAAGAGAGTGATGAACTTGATGAAGAGGAAAAGAGGATTGGGAAGCTTATCAAGGACTTTATGTATGTTTCTGGCAACCCAGTTGTTACTGAGGTAATTGGGTTTCCAAAGTGGATGGATTTCAAGGGGCAATTGAAAACGATGGAGAATATAGGGAGCCAATTAGACTCTTTGATGACAAGTTGGGTTGAAGAACATCATACAAAGAAGCAGAAGAGTGACTCAAGCAACCAGCAGCAGGACTTCATTAATGTCCTACTATCTGAGATTCAGGACAGTTCTATGCTTGGTCATACCCGAGATACTATTATCAAGGCAACAGCACTGAGATTGATCATGAAGGATAAGAAGGTACCTTCGTTCTATGGTTCACATCCACCCCTTTCACGGTTTTCCAGCACCATGACCAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

309

Amino Acids

33.79

Weight (kDa)

5.26

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	865
AccB1I	GGYRCC	2 cut(s)	108, 865
AccB7I	CCANNNNNTGG	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	1 cut(s)	428
AciI	CCGC	6 cut(s)	69, 105, 216, 426, 446, 472
AclWI	GGATC	4 cut(s)	44, 308, 375, 504
AcyI	GRCGYC	1 cut(s)	109
AdeI	CACNNNGTG	1 cut(s)	437
AfaI	GTAC	3 cut(s)	189, 506, 867
AfiI	CCNNNNNNNGG	4 cut(s)	267, 287, 751, 900
AgsI	TTSAA	3 cut(s)	637, 649, 704
AhdI	GACNNNNNGTC	1 cut(s)	404
AjnI	CCWGG	2 cut(s)	183, 207
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	6, 92, 559
AluI	AGCT	3 cut(s)	6, 92, 559
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	4 cut(s)	44, 308, 375, 504
Ama87I	CYCGRG	1 cut(s)	810
AoxI	GGCC	2 cut(s)	70, 180
ApeKI	GCWGC	2 cut(s)	457, 748
AseI	ATTAAT	1 cut(s)	762
Asp700I	GAANNNNTTC	1 cut(s)	233
Asp718I	GGTACC	1 cut(s)	865
AspLEI	GCGC	2 cut(s)	111, 430
AspS9I	GGNCC	3 cut(s)	173, 181, 375
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	230, 260
AvaI	CYCGRG	1 cut(s)	810
AvaII	GGWCC	2 cut(s)	173, 375
AxyI	CCTNAGG	1 cut(s)	177
BaeI	ACNNNNGTAYC	4 cut(s)	496, 529, 857, 890
BanI	GGYRCC	2 cut(s)	108, 865
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	444, 760
BccI	CCATC	5 cut(s)	164, 239, 413, 622, 649
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	185, 209
BclI	TGATCA	1 cut(s)	846
BcnI	CCSGG	1 cut(s)	268
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	213
BisI	GCNGC	4 cut(s)	70, 426, 458, 749
BlsI	GCNGC	4 cut(s)	71, 427, 459, 750
Bme1390I	CCNGG	3 cut(s)	185, 209, 268
Bme18I	GGWCC	2 cut(s)	173, 375
BmeRI	GACNNNNNGTC	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	810
BmgT120I	GGNCC	3 cut(s)	173, 181, 375
BmiI	GGNNCC	6 cut(s)	110, 325, 376, 424, 671, 867
BmrFI	CCNGG	3 cut(s)	185, 209, 268
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	587
BpmI	CTGGAG	2 cut(s)	219, 422
BpuEI	CTTGAG	2 cut(s)	400, 721
BpuMI	CCSGG	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	4 cut(s)	267, 287, 751, 900
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	31, 405, 593
Bse21I	CCTNAGG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	185, 209
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	424, 633, 886
BseLI	CCNNNNNNNGG	4 cut(s)	267, 287, 751, 900
BseMII	CTCAG	3 cut(s)	594, 768, 830
BseNI	ACTGG	3 cut(s)	31, 405, 593
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	444, 760
BseYI	CCCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	72, 182
BshNI	GGYRCC	2 cut(s)	108, 865
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	810
BsiSI	CCGG	2 cut(s)	45, 267
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	4 cut(s)	267, 287, 751, 900
BsmFI	GGGAC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	72, 182
BsoBI	CYCGRG	1 cut(s)	810
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	49, 300, 367, 496, 846
BspACI	CCGC	6 cut(s)	69, 105, 216, 426, 446, 472
BspANI	GGCC	2 cut(s)	72, 182
BspCNI	CTCAG	3 cut(s)	595, 769, 831
BspFNI	CGCG	1 cut(s)	428
BspHI	TCATGA	1 cut(s)	849
BspLI	GGNNCC	6 cut(s)	110, 325, 376, 424, 671, 867
BspMAI	CTGCAG	1 cut(s)	462
BspPI	GGATC	4 cut(s)	44, 308, 375, 504
BspT107I	GGYRCC	2 cut(s)	108, 865
BsrBI	CCGCTC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	3 cut(s)	31, 405, 593
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	5 cut(s)	49, 300, 367, 496, 846
BssNI	GRCGYC	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	185, 209
Bst4CI	ACNGT	4 cut(s)	164, 192, 791, 903
Bst6I	CTCTTC	2 cut(s)	531, 722
BstACI	GRCGYC	1 cut(s)	109
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	107, 474
BstDEI	CTNAG	4 cut(s)	177, 603, 777, 839
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	424, 633, 886
BstFNI	CGCG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	111, 430
BstKTI	GATC	5 cut(s)	52, 303, 370, 499, 849
BstMBI	GATC	5 cut(s)	49, 300, 367, 496, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 473
BstNI	CCWGG	2 cut(s)	185, 209
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	183, 207, 266
BstSFI	CTRYAG	1 cut(s)	458
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	444, 760
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	72, 182
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	424, 633, 886
BtsIMutI	CAGTG	2 cut(s)	345, 836
Cac8I	GCNNGC	2 cut(s)	107, 474
CciI	TCATGA	1 cut(s)	849
CfoI	GCGC	2 cut(s)	111, 430
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	173, 181, 375
Csp6I	GTAC	3 cut(s)	188, 505, 866
CviAII	CATG	3 cut(s)	492, 850, 916
CviQI	GTAC	3 cut(s)	188, 505, 866
DdeI	CTNAG	4 cut(s)	177, 603, 777, 839
DinI	GGCGCC	1 cut(s)	110
DpnI	GATC	5 cut(s)	51, 302, 369, 498, 848
DpnII	GATC	5 cut(s)	49, 300, 367, 496, 846
DraIII	CACNNNGTG	1 cut(s)	437
DriI	GACNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	531, 722
Eam1105I	GACNNNNNGTC	1 cut(s)	404
EarI	CTCTTC	2 cut(s)	531, 722
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	173, 375
Eco53kI	GAGCTC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	810
Eco91I	GGTNACC	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	2 cut(s)	181, 375
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	183, 207
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	110
EheI	GGCGCC	1 cut(s)	110
FaeI	CATG	3 cut(s)	495, 853, 919
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	3 cut(s)	491, 849, 915
FauI	CCCGC	2 cut(s)	98, 465
FbaI	TGATCA	1 cut(s)	846
Fnu4HI	GCNGC	4 cut(s)	70, 426, 458, 749
FokI	GGATG	3 cut(s)	431, 640, 873
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	70, 426, 458, 749
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	110, 429
GluI	GCNGC	4 cut(s)	70, 426, 458, 749
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	2 cut(s)	219, 422
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	72, 182
HapII	CCGG	2 cut(s)	45, 267
HhaI	GCGC	2 cut(s)	111, 430
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	495, 853, 919
Hin6I	GCGC	2 cut(s)	109, 428
HinP1I	GCGC	2 cut(s)	109, 428
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	6 cut(s)	95, 234, 488, 680, 734, 781
HpaII	CCGG	2 cut(s)	45, 267
HphI	GGTGA	2 cut(s)	230, 260
Hpy166II	GTNNAC	1 cut(s)	884
Hpy188I	TCNGA	5 cut(s)	10, 64, 398, 501, 778
Hpy188III	TCNNGA	4 cut(s)	22, 242, 785, 850
Hpy8I	GTNNAC	1 cut(s)	884
HpyAV	CCTTC	7 cut(s)	129, 353, 409, 476, 847, 856, 879
HpyCH4III	ACNGT	4 cut(s)	164, 192, 791, 903
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 473
HpyF3I	CTNAG	4 cut(s)	177, 603, 777, 839
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	495, 853, 919
HspAI	GCGC	2 cut(s)	109, 428
KasI	GGCGCC	1 cut(s)	108
KpnI	GGTACC	1 cut(s)	869
Ksp22I	TGATCA	1 cut(s)	846
Kzo9I	GATC	5 cut(s)	49, 300, 367, 496, 846
LmnI	GCTCC	5 cut(s)	11, 102, 323, 422, 669
Lsp1109I	GCAGC	2 cut(s)	444, 760
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	5 cut(s)	22, 158, 248, 598, 731
MalI	GATC	5 cut(s)	51, 302, 369, 498, 848
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	5 cut(s)	49, 300, 367, 496, 846
MboII	GAAGA	3 cut(s)	548, 716, 739
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	609, 644, 674
Mly113I	GGCGCC	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	674, 728
MnlI	CCTC	8 cut(s)	75, 285, 288, 397, 495, 532, 540, 598
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	2 cut(s)	126, 762
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	2 cut(s)	45, 267
MspR9I	CCNGG	3 cut(s)	185, 209, 268
MunI	CAATTG	1 cut(s)	644
MvaI	CCWGG	2 cut(s)	185, 209
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	213, 473
NarI	GGCGCC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	5 cut(s)	49, 300, 367, 496, 846
NlaIII	CATG	3 cut(s)	495, 853, 919
NlaIV	GGNNCC	6 cut(s)	110, 325, 376, 424, 671, 867
NmuCI	GTSAC	3 cut(s)	22, 248, 731
OliI	CACNNNNGTG	1 cut(s)	246
PagI	TCATGA	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 336
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	4 cut(s)	95, 234, 488, 781
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	71, 427, 459, 750
PleI	GAGTC	2 cut(s)	674, 728
PluTI	GGCGCC	1 cut(s)	112
PpsI	GAGTC	2 cut(s)	674, 728
Ppu21I	YACGTR	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	375
PshBI	ATTAAT	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	183, 207
PspEI	GGTNACC	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	183, 207
PspN4I	GGNNCC	6 cut(s)	110, 325, 376, 424, 671, 867
PspPI	GGNCC	3 cut(s)	173, 181, 375
PspPPI	RGGWCCY	1 cut(s)	375
PstI	CTGCAG	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	3 cut(s)	189, 506, 867
RsaNI	GTAC	3 cut(s)	188, 505, 866
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	126, 762
SatI	GCNGC	4 cut(s)	70, 426, 458, 749
Sau3AI	GATC	5 cut(s)	49, 300, 367, 496, 846
Sau96I	GGNCC	3 cut(s)	173, 181, 375
SchI	GAGTC	2 cut(s)	674, 728
ScrFI	CCNGG	3 cut(s)	185, 209, 268
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	458
SfoI	GGCGCC	1 cut(s)	110
SinI	GGWCC	2 cut(s)	173, 375
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	379, 736
SmoI	CTYRAG	2 cut(s)	379, 736
Sse9I	AATT	3 cut(s)	609, 644, 674
SsiI	CCGC	6 cut(s)	69, 105, 216, 426, 446, 472
SspDI	GGCGCC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	183, 207, 266
TaaI	ACNGT	4 cut(s)	164, 192, 791, 903
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	339, 480
TasI	AATT	3 cut(s)	609, 644, 674
TauI	GCSGC	2 cut(s)	72, 428
TfiI	GAWTC	4 cut(s)	95, 234, 488, 781
Tru1I	TTAA	2 cut(s)	126, 762
Tru9I	TTAA	2 cut(s)	126, 762
TscAI	CASTG	2 cut(s)	352, 843
TseFI	GTSAC	3 cut(s)	22, 248, 731
TseI	GCWGC	2 cut(s)	457, 748
Tsp45I	GTSAC	3 cut(s)	22, 248, 731
TspDTI	ATGAA	6 cut(s)	226, 428, 540, 549, 748, 866
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	352, 843
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	2 cut(s)	173, 375
VspI	ATTAAT	1 cut(s)	762
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.