Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004556

Physical Location & Seq

Genomic Coordinates Reverse (-)

23177450 .. 23177890

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG244700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTGGGATCGGTGTGACGCTCATGTGGCTGCGATTCCCTGAGGCTGCTGGGGGTTTGCGACTATGGTACGACGATGCAGTCGTCGATATAAGACCGGGTTTTATTGAAGAAGATAGTGATGCAGTCGATGCCACTGGTTATGGCGGCGATGCGGATCTTGGGTCCTTGGGTTTTGATATGTTTGGACCAGAAATCAATATGAAGGATGGACGCGCGCCACTATGTGCTGGCGGGGTAGAGCTGCTGATATCGGTGAAGCGGGCTGCTAGATGGCTGGTTGATCGACTGTCGGCGACTCCGATGGCAGGGATAGCATGCTGGCGGTTTCTTGGGTTCCTTGGGCCGTGGGCTGCGGCTGCGGCACTGAAATCAAGTTCTTGGCCGGGATCTCTTGTGTCTAGAATGAGCAGTGGGTTTTTATACACTTTTTTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.63

Weight (kDa)

4.68

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0021411
rosa_laevigata	RLG00000002834 RLG00000007094 RLG00000010203 RLG00000013395 RLG00000021137 RLG00000031183 RLG00000036340
rosa_multiflora	Rmu_sc0008280.1_g000012 Rmu_sc0010698.1_g000012
rosa_roxburghii	Rroxscaffold_5G00349020
rosa_samantha	Rh1AG166800 Rh1BG133900 Rh2BG005500 Rh3AG209900 Rh3BG244700 Rh3DG236400 Rh3DG267400 Rh5AG156200 Rh5AG489200 Rh5BG177200 Rh6AG130500 Rh6AG270900 Rh6AG271000 Rh6BG127800 Rh6CG273100 Rh6DG113100 Rh6DG297100 Rh7AG478100 Rh7BG450200 Rh7CG207200 Rh7CG500700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccII	CGCG	2 cut(s)	216, 218
AciI	CCGC	7 cut(s)	147, 155, 234, 262, 325, 356, 362
AclWI	GGATC	3 cut(s)	17, 165, 397
AcoI	YGGCCR	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	110
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AlwI	GGATC	3 cut(s)	17, 165, 397
AoxI	GGCC	2 cut(s)	344, 383
ApeKI	GCWGC	6 cut(s)	31, 47, 244, 266, 353, 359
AspLEI	GCGC	2 cut(s)	218, 220
AspS9I	GGNCC	3 cut(s)	165, 188, 344
AsuC2I	CCSGG	2 cut(s)	99, 387
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	165, 188
AxyI	CCTNAGG	1 cut(s)	42
BbvI	GCAGC	6 cut(s)	18, 34, 231, 253, 340, 346
BccI	CCATC	3 cut(s)	203, 267, 298
BceAI	ACGGC	1 cut(s)	331
BcnI	CCSGG	2 cut(s)	99, 387
BfaI	CTAG	2 cut(s)	270, 402
BisI	GCNGC	9 cut(s)	32, 48, 148, 245, 267, 354, 357, 360, 363
BlsI	GCNGC	9 cut(s)	33, 49, 149, 246, 268, 355, 358, 361, 364
Bme1390I	CCNGG	2 cut(s)	99, 387
Bme18I	GGWCC	2 cut(s)	165, 188
BmgT120I	GGNCC	3 cut(s)	165, 188, 344
BmiI	GGNNCC	2 cut(s)	166, 338
BmrFI	CCNGG	2 cut(s)	99, 387
BmsI	GCATC	4 cut(s)	67, 112, 121, 142
BpuMI	CCSGG	2 cut(s)	99, 387
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	168, 340, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	142
Bse21I	CCTNAGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	168, 340, 347
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	142
BsePI	GCGCGC	1 cut(s)	216
BseXI	GCAGC	6 cut(s)	18, 34, 231, 253, 340, 346
BseYI	CCCAGC	2 cut(s)	5, 50
Bsh1236I	CGCG	2 cut(s)	216, 218
BshFI	GGCC	2 cut(s)	346, 385
BsiSI	CCGG	2 cut(s)	98, 386
BslI	CCNNNNNNNGG	1 cut(s)	308
BsnI	GGCC	2 cut(s)	346, 385
Bsp143I	GATC	4 cut(s)	9, 157, 283, 389
BspACI	CCGC	7 cut(s)	147, 155, 234, 262, 325, 356, 362
BspANI	GGCC	2 cut(s)	346, 385
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	2 cut(s)	216, 218
BspLI	GGNNCC	2 cut(s)	166, 338
BspPI	GGATC	3 cut(s)	17, 165, 397
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	168, 340, 347
BssHII	GCGCGC	1 cut(s)	216
BssMI	GATC	4 cut(s)	9, 157, 283, 389
BssT1I	CCWWGG	2 cut(s)	168, 340
Bst4CI	ACNGT	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	5 cut(s)	218, 232, 264, 319, 323
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	2 cut(s)	216, 218
BstHHI	GCGC	2 cut(s)	218, 220
BstKTI	GATC	4 cut(s)	12, 160, 286, 392
BstMBI	GATC	4 cut(s)	9, 157, 283, 389
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 131, 314, 359, 362
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	97, 385
BstUI	CGCG	2 cut(s)	216, 218
BstV1I	GCAGC	6 cut(s)	18, 34, 231, 253, 340, 346
BstX2I	RGATCY	2 cut(s)	157, 389
BstYI	RGATCY	2 cut(s)	157, 389
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	346, 385
BtgI	CCRYGG	1 cut(s)	347
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	3 cut(s)	135, 365, 418
Cac8I	GCNNGC	5 cut(s)	218, 232, 264, 319, 323
CfoI	GCGC	2 cut(s)	218, 220
Cfr13I	GGNCC	3 cut(s)	165, 188, 344
CseI	GACGC	2 cut(s)	28, 222
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	25, 318
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	4 cut(s)	11, 159, 285, 391
DpnII	GATC	4 cut(s)	9, 157, 283, 389
DraIII	CACNNNGTG	1 cut(s)	227
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	168, 340
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	165, 188
Eco81I	CCTNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	168, 340
ErhI	CCWWGG	2 cut(s)	168, 340
FaeI	CATG	2 cut(s)	28, 321
FaiI	YATR	9 cut(s)	26, 67, 92, 144, 182, 203, 226, 319, 424
FatI	CATG	2 cut(s)	24, 317
FauI	CCCGC	2 cut(s)	227, 255
Fnu4HI	GCNGC	9 cut(s)	32, 48, 148, 245, 267, 354, 357, 360, 363
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	9 cut(s)	32, 48, 148, 245, 267, 354, 357, 360, 363
FspBI	CTAG	2 cut(s)	270, 402
GlaI	GCGC	2 cut(s)	217, 219
GluI	GCNGC	9 cut(s)	32, 48, 148, 245, 267, 354, 357, 360, 363
GsaI	CCCAGC	2 cut(s)	9, 54
HaeIII	GGCC	2 cut(s)	346, 385
HapII	CCGG	2 cut(s)	98, 386
HgaI	GACGC	2 cut(s)	28, 222
HhaI	GCGC	2 cut(s)	218, 220
Hin1II	CATG	2 cut(s)	28, 321
Hin6I	GCGC	2 cut(s)	216, 218
HinP1I	GCGC	2 cut(s)	216, 218
HinfI	GANTC	2 cut(s)	36, 298
HpaII	CCGG	2 cut(s)	98, 386
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	1 cut(s)	402
Hpy99I	CGWCG	2 cut(s)	77, 89
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	80, 125
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 131, 314, 359, 362
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	28, 321
HspAI	GCGC	2 cut(s)	216, 218
Kzo9I	GATC	4 cut(s)	9, 157, 283, 389
Lsp1109I	GCAGC	6 cut(s)	18, 34, 231, 253, 340, 346
LweI	GCATC	4 cut(s)	67, 112, 121, 142
MaeI	CTAG	2 cut(s)	270, 402
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	11, 159, 285, 391
MboI	GATC	4 cut(s)	9, 157, 283, 389
MboII	GAAGA	2 cut(s)	122, 125
MflI	RGATCY	2 cut(s)	157, 389
MluCI	AATT	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	1 cut(s)	37
MseI	TTAA	1 cut(s)	435
MspI	CCGG	2 cut(s)	98, 386
MspR9I	CCNGG	2 cut(s)	99, 387
MvnI	CGCG	2 cut(s)	216, 218
MwoI	GCNNNNNNNGC	5 cut(s)	28, 131, 314, 359, 362
NciI	CCSGG	2 cut(s)	99, 387
NdeII	GATC	4 cut(s)	9, 157, 283, 389
NlaIII	CATG	2 cut(s)	28, 321
NlaIV	GGNNCC	2 cut(s)	166, 338
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	321
PaeI	GCATGC	1 cut(s)	321
PauI	GCGCGC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 299
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	9 cut(s)	33, 49, 149, 246, 268, 355, 358, 361, 364
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	165
PspFI	CCCAGC	2 cut(s)	5, 50
PspN4I	GGNNCC	2 cut(s)	166, 338
PspPI	GGNCC	3 cut(s)	165, 188, 344
PspPPI	RGGWCCY	1 cut(s)	165
PsuI	RGATCY	2 cut(s)	157, 389
PteI	GCGCGC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	9 cut(s)	32, 48, 148, 245, 267, 354, 357, 360, 363
Sau3AI	GATC	4 cut(s)	9, 157, 283, 389
Sau96I	GGNCC	3 cut(s)	165, 188, 344
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	99, 387
SetI	ASST	1 cut(s)	246
SfaNI	GCATC	4 cut(s)	67, 112, 121, 142
SinI	GGWCC	2 cut(s)	165, 188
SphI	GCATGC	1 cut(s)	321
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	7 cut(s)	147, 155, 234, 262, 325, 356, 362
SspMI	CTAG	2 cut(s)	270, 402
StyD4I	CCNGG	2 cut(s)	97, 385
StyI	CCWWGG	2 cut(s)	168, 340
TaaI	ACNGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	87, 129, 286
TasI	AATT	1 cut(s)	436
TauI	GCSGC	3 cut(s)	150, 359, 365
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	3 cut(s)	142, 372, 418
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	6 cut(s)	31, 47, 244, 266, 353, 359
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	142, 372, 418
VpaK11BI	GGWCC	2 cut(s)	165, 188
XbaI	TCTAGA	1 cut(s)	401
XceI	RCATGY	1 cut(s)	321
XspI	CTAG	2 cut(s)	270, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.