Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Forward (+)

15563526 .. 15566167

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007304

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCAGGGGGTGGAGAATGGTGGAAGAGCACAGTTCGCGAAACAGGTAGTGGGGTCTGGAATGGCGGCACTAGTGGCAAGCTCATCTGAAATTAGGATTAACAATGGTTCCTTTCTTCCTCACAGATTTAGGCGTCAGGTTACTATAAGGGAGATTGAAGAACATATAAAGGATGCTTCACCTATCATTGGCTCGCCACATCGCCAGAATGGTTTGTGTTGTCGCAGAGGCCAGGAGATTTCGTTGGAGCCAATTTTGGAGATAGTCTCCGAGCACCAGTTATGGACAGAGGCGACGCCGGTTATGGACATCGTCTCCCAGCACCTCTGCCGCTGCTTCACTGCCTGCGACACTGTCAACTGCACCGGCTCCCGTTCCAACAATCTCAATGTCGGCCAAGGAGCCCAGGACCGCAAGAAGGACCACCATCGCAAAATCATCACCAGCAACTCTTATGCTGGATACGACGGTGCCGAACCGACCCGGTCAGGACTTCGCCTTGTTGGAATTCGGATCTCCATGGTTGGTTCCTTGTTTTCGAGTCCAGTTTGGCGGGGTTTGGCACAGTTTCGAGTCTTGCAATTTTGTTTTGATTTTATTATTATTAGTCTTACATGCAAACAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

210

Amino Acids

23.23

Weight (kDa)

9.2

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccII	CGCG	1 cut(s)	38
AciI	CCGC	4 cut(s)	65, 331, 412, 553
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	507
AcyI	GRCGYC	2 cut(s)	133, 296
AfiI	CCNNNNNNNGG	2 cut(s)	188, 418
AgsI	TTSAA	1 cut(s)	158
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	231, 405
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw21I	GWGCWC	2 cut(s)	31, 276
Alw26I	GTCTC	2 cut(s)	271, 319
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	2 cut(s)	229, 394
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	507
AspS9I	GGNCC	2 cut(s)	409, 421
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	171, 433
AvaII	GGWCC	2 cut(s)	409, 421
BaeI	ACNNNNGTAYC	2 cut(s)	454, 487
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	31, 276
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	1 cut(s)	435
BciT130I	CCWGG	2 cut(s)	233, 407
BciVI	GTATCC	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	271, 319
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	66, 331, 334
BlsI	GCNGC	3 cut(s)	67, 332, 335
Bme1390I	CCNGG	3 cut(s)	233, 407, 484
Bme18I	GGWCC	2 cut(s)	409, 421
BmgT120I	GGNCC	2 cut(s)	409, 421
BmiI	GGNNCC	6 cut(s)	109, 249, 370, 403, 472, 529
BmrFI	CCNGG	3 cut(s)	233, 407, 484
BmsI	GCATC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpuMI	CCSGG	1 cut(s)	484
BsaHI	GRCGYC	2 cut(s)	133, 296
BsaJI	CCNNGG	3 cut(s)	397, 405, 519
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 418
Bse118I	RCCGGY	2 cut(s)	298, 365
Bse1I	ACTGG	2 cut(s)	277, 545
BseBI	CCWGG	2 cut(s)	233, 407
BseDI	CCNNGG	3 cut(s)	397, 405, 519
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	188, 418
BseNI	ACTGG	2 cut(s)	277, 545
BseXI	GCAGC	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	231, 396
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	31, 276
BsiSI	CCGG	3 cut(s)	299, 366, 484
BslI	CCNNNNNNNGG	2 cut(s)	188, 418
BsmAI	GTCTC	2 cut(s)	271, 319
BsmBI	CGTCTC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	231, 396
Bsp1286I	GDGCHC	3 cut(s)	31, 276, 406
Bsp143I	GATC	1 cut(s)	513
Bsp19I	CCATGG	1 cut(s)	519
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	4 cut(s)	65, 331, 412, 553
BspANI	GGCC	2 cut(s)	231, 396
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	6 cut(s)	109, 249, 370, 403, 472, 529
BspPI	GGATC	1 cut(s)	521
BspQI	GCTCTTC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	470
BsrFI	RCCGGY	2 cut(s)	298, 365
BsrI	ACTGG	2 cut(s)	277, 545
BssAI	RCCGGY	2 cut(s)	298, 365
BssECI	CCNNGG	3 cut(s)	397, 405, 519
BssMI	GATC	1 cut(s)	513
BssNI	GRCGYC	2 cut(s)	133, 296
BssT1I	CCWWGG	2 cut(s)	397, 519
Bst2UI	CCWGG	2 cut(s)	233, 407
Bst4CI	ACNGT	4 cut(s)	33, 355, 470, 567
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	2 cut(s)	133, 296
BstC8I	GCNNGC	3 cut(s)	79, 194, 346
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	516
BstMAI	GTCTC	2 cut(s)	271, 319
BstMBI	GATC	1 cut(s)	513
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 74
BstNI	CCWGG	2 cut(s)	233, 407
BstNSI	RCATGY	1 cut(s)	618
BstSCI	CCNGG	3 cut(s)	231, 405, 482
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	231, 396
BtgI	CCRYGG	1 cut(s)	519
BtgZI	GCGATG	2 cut(s)	185, 413
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	339, 351
BtuMI	TCGCGA	1 cut(s)	38
Cac8I	GCNNGC	3 cut(s)	79, 194, 346
Cfr10I	RCCGGY	2 cut(s)	298, 365
Cfr13I	GGNCC	2 cut(s)	409, 421
CseI	GACGC	2 cut(s)	122, 304
CviAII	CATG	2 cut(s)	520, 615
CviJI	RGCY	7 cut(s)	81, 192, 231, 250, 369, 396, 404
CviKI_1	RGCY	7 cut(s)	81, 192, 231, 250, 369, 396, 404
DpnI	GATC	1 cut(s)	515
DpnII	GATC	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	397, 519
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	409, 421
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	231, 405
EcoT14I	CCWWGG	2 cut(s)	397, 519
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	397, 519
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	2 cut(s)	523, 618
FaiI	YATR	8 cut(s)	146, 165, 167, 283, 305, 456, 521, 616
FatI	CATG	2 cut(s)	519, 614
FauI	CCCGC	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	66, 331, 334
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	66, 331, 334
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	3 cut(s)	66, 331, 334
GsaI	CCCAGC	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	231, 396
HapII	CCGG	3 cut(s)	299, 366, 484
HgaI	GACGC	2 cut(s)	122, 304
Hin1I	GRCGYC	2 cut(s)	133, 296
Hin1II	CATG	2 cut(s)	523, 618
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	2 cut(s)	541, 573
HpaII	CCGG	3 cut(s)	299, 366, 484
HphI	GGTGA	2 cut(s)	171, 433
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	88, 271, 513
Hpy188III	TCNNGA	3 cut(s)	37, 57, 489
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	2 cut(s)	298, 470
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	4 cut(s)	33, 355, 470, 567
HpyCH4V	TGCA	4 cut(s)	4, 363, 580, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 74
Hsp92I	GRCGYC	2 cut(s)	133, 296
Hsp92II	CATG	2 cut(s)	523, 618
Kzo9I	GATC	1 cut(s)	513
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	247, 374, 401
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	515
MboI	GATC	1 cut(s)	513
MboII	GAAGA	3 cut(s)	36, 107, 170
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	3 cut(s)	31, 276, 406
MluCI	AATT	4 cut(s)	90, 252, 507, 581
MlyI	GAGTC	2 cut(s)	550, 582
MmeI	TCCRAC	3 cut(s)	225, 402, 484
MnlI	CCTC	4 cut(s)	129, 221, 283, 335
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	3 cut(s)	299, 366, 484
MspR9I	CCNGG	3 cut(s)	233, 407, 484
MvaI	CCWGG	2 cut(s)	233, 407
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	35, 74
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	1 cut(s)	513
NlaIII	CATG	2 cut(s)	523, 618
NlaIV	GGNNCC	6 cut(s)	109, 249, 370, 403, 472, 529
NruI	TCGCGA	1 cut(s)	38
NspI	RCATGY	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PflFI	GACNNNGTC	3 cut(s)	311, 353, 484
PkrI	GCNGC	3 cut(s)	67, 332, 335
PleI	GAGTC	2 cut(s)	549, 581
PpsI	GAGTC	2 cut(s)	549, 581
Psp6I	CCWGG	2 cut(s)	231, 405
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	2 cut(s)	231, 405
PspN4I	GGNNCC	6 cut(s)	109, 249, 370, 403, 472, 529
PspPI	GGNCC	2 cut(s)	409, 421
PsuI	RGATCY	1 cut(s)	513
PsyI	GACNNNGTC	3 cut(s)	311, 353, 484
RruI	TCGCGA	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	3 cut(s)	66, 331, 334
Sau3AI	GATC	1 cut(s)	513
Sau96I	GGNCC	2 cut(s)	409, 421
SchI	GAGTC	2 cut(s)	550, 582
ScrFI	CCNGG	3 cut(s)	233, 407, 484
SduI	GDGCHC	3 cut(s)	31, 276, 406
SetI	ASST	6 cut(s)	48, 83, 141, 184, 327, 629
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	2 cut(s)	409, 421
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	4 cut(s)	90, 252, 507, 581
SsiI	CCGC	4 cut(s)	65, 331, 412, 553
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	231, 405, 482
StyI	CCWWGG	2 cut(s)	397, 519
TaaI	ACNGT	4 cut(s)	33, 355, 470, 567
TaqI	TCGA	2 cut(s)	539, 571
TasI	AATT	4 cut(s)	90, 252, 507, 581
TauI	GCSGC	2 cut(s)	68, 333
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	346, 358
TseI	GCWGC	1 cut(s)	333
TspRI	CASTG	2 cut(s)	346, 358
Tth111I	GACNNNGTC	3 cut(s)	311, 353, 484
VpaK11BI	GGWCC	2 cut(s)	409, 421
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	618
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.