Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Forward (+)

5280478 .. 5298055

Gene Structure 17578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCTGCTGGTCTCACCAGGCTCGCCACGTCGCTGGAATGGTTTGGGTCGTCACGGAGGCCAGGAGATTTCGTCGGAGCCAGTTTTGGAGATCGTCTCCGAGCACCGGTTATGGACAGAGGCAACGCCGGTTATGGACATCGTCTCCAAGCGCCTCCGCCGCTGCTTCACCGCCTGCGACATCGTCAACTGCACCGGCTCCCACTCCGACAATCTCAATGCCGGCCAGGGAGCCGAGGACCGCAACTCTTATGTTGGATACGACGGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTCAGATCTCCAGATCGGGTTCAATCGGAGGTGTTGCAGATCGGGTTTCGTCGATGGGTGTACAATCCGTCTCCCTTTGCTATACTTCCATGGATAAATTGAAGAGGCATCTTCCTTTCTCCGGTCAAGAAGGATTGGATCTCCGGTCAAGAAGGATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

155

Amino Acids

16.81

Weight (kDa)

8.84

Isoelectric Point (pI)

72.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	4 cut(s)	157, 160, 171, 241
AclWI	GGATC	1 cut(s)	450
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	303
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	3 cut(s)	105, 285, 425
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	327, 406
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	3 cut(s)	16, 60, 225
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	4 cut(s)	16, 100, 148, 379
AlwI	GGATC	1 cut(s)	450
AoxI	GGCC	2 cut(s)	58, 223
ApeKI	GCWGC	2 cut(s)	4, 162
ApoI	RAATTY	1 cut(s)	303
AsiGI	ACCGGT	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	6, 160
AvaII	GGWCC	1 cut(s)	238
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	3 cut(s)	18, 62, 227
BciVI	GTATCC	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	4 cut(s)	16, 100, 148, 379
BfoI	RGCGCY	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	251
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	3 cut(s)	5, 160, 163
BlsI	GCNGC	3 cut(s)	6, 161, 164
Bme1390I	CCNGG	4 cut(s)	18, 62, 227, 280
Bme18I	GGWCC	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	4 cut(s)	78, 199, 232, 268
BmrFI	CCNGG	4 cut(s)	18, 62, 227, 280
BmsI	GCATC	1 cut(s)	421
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	226, 234, 393
BsaWI	WCCGGW	3 cut(s)	105, 425, 447
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 128, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 285, 425
Bse118I	RCCGGY	4 cut(s)	105, 127, 194, 221
Bse1I	ACTGG	1 cut(s)	80
BseBI	CCWGG	3 cut(s)	18, 62, 227
BseDI	CCNNGG	3 cut(s)	226, 234, 393
BseLI	CCNNNNNNNGG	3 cut(s)	105, 285, 425
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	60, 225
BshNI	GGYRCC	1 cut(s)	266
BshTI	ACCGGT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	7 cut(s)	106, 128, 195, 222, 280, 426, 448
BslI	CCNNNNNNNGG	3 cut(s)	105, 285, 425
BsmAI	GTCTC	4 cut(s)	16, 100, 148, 379
BsmBI	CGTCTC	3 cut(s)	100, 148, 379
BsnI	GGCC	2 cut(s)	60, 225
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	5 cut(s)	90, 309, 317, 343, 442
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	4 cut(s)	157, 160, 171, 241
BspANI	GGCC	2 cut(s)	60, 225
BspLI	GGNNCC	4 cut(s)	78, 199, 232, 268
BspPI	GGATC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	16
BsrFI	RCCGGY	4 cut(s)	105, 127, 194, 221
BsrGI	TGTACA	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	80
BssAI	RCCGGY	4 cut(s)	105, 127, 194, 221
BssECI	CCNNGG	3 cut(s)	226, 234, 393
BssMI	GATC	5 cut(s)	90, 309, 317, 343, 442
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	3 cut(s)	18, 62, 227
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	401
BstAUI	TGTACA	1 cut(s)	364
BstC8I	GCNNGC	3 cut(s)	23, 175, 223
BstDSI	CCRYGG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	5 cut(s)	93, 312, 320, 346, 445
BstMAI	GTCTC	4 cut(s)	16, 100, 148, 379
BstMBI	GATC	5 cut(s)	90, 309, 317, 343, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	3 cut(s)	18, 62, 227
BstSCI	CCNGG	4 cut(s)	16, 60, 225, 278
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	309, 442
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	2 cut(s)	309, 442
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	60, 225
BtgI	CCRYGG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	23, 175, 223
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	4 cut(s)	105, 127, 194, 221
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	365
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	7 cut(s)	21, 60, 79, 198, 225, 233, 289
CviKI_1	RGCY	7 cut(s)	21, 60, 79, 198, 225, 233, 289
CviQI	GTAC	1 cut(s)	365
DpnI	GATC	5 cut(s)	92, 311, 319, 345, 444
DpnII	GATC	5 cut(s)	90, 309, 317, 343, 442
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	303
EcoRII	CCWGG	3 cut(s)	16, 60, 225
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	3 cut(s)	100, 148, 379
FaeI	CATG	1 cut(s)	397
FaiI	YATR	5 cut(s)	112, 134, 252, 387, 395
FatI	CATG	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	5, 160, 163
Fsp4HI	GCNGC	3 cut(s)	5, 160, 163
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	3 cut(s)	5, 160, 163
GsuI	CTGGAG	1 cut(s)	298
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	2 cut(s)	60, 225
HapII	CCGG	7 cut(s)	106, 128, 195, 222, 280, 426, 448
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HpaII	CCGG	7 cut(s)	106, 128, 195, 222, 280, 426, 448
HphI	GGTGA	2 cut(s)	6, 160
Hpy166II	GTNNAC	2 cut(s)	187, 365
Hpy188I	TCNGA	5 cut(s)	76, 100, 208, 309, 332
Hpy188III	TCNNGA	3 cut(s)	315, 431, 453
Hpy8I	GTNNAC	2 cut(s)	187, 365
Hpy99I	CGWCG	4 cut(s)	33, 76, 266, 358
HpyAV	CCTTC	2 cut(s)	428, 450
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	192, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	90, 309, 317, 343, 442
LmnI	GCTCC	3 cut(s)	76, 203, 230
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	421
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	5 cut(s)	92, 311, 319, 345, 444
MboI	GATC	5 cut(s)	90, 309, 317, 343, 442
MboII	GAAGA	2 cut(s)	407, 418
MflI	RGATCY	2 cut(s)	309, 442
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	303, 401
MmeI	TCCRAC	4 cut(s)	54, 231, 235, 280
MnlI	CCTC	6 cut(s)	50, 112, 164, 229, 326, 402
MroNI	GCCGGC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	7 cut(s)	106, 128, 195, 222, 280, 426, 448
MspR9I	CCNGG	4 cut(s)	18, 62, 227, 280
MvaI	CCWGG	3 cut(s)	18, 62, 227
MwoI	GCNNNNNNNGC	1 cut(s)	159
NaeI	GCCGGC	1 cut(s)	223
NciI	CCSGG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	5 cut(s)	90, 309, 317, 343, 442
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	4 cut(s)	78, 199, 232, 268
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	223
PflFI	GACNNNGTC	3 cut(s)	140, 182, 280
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	6, 161, 164
Psp6I	CCWGG	3 cut(s)	16, 60, 225
PspGI	CCWGG	3 cut(s)	16, 60, 225
PspN4I	GGNNCC	4 cut(s)	78, 199, 232, 268
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	309, 442
PsyI	GACNNNGTC	3 cut(s)	140, 182, 280
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SatI	GCNGC	3 cut(s)	5, 160, 163
Sau3AI	GATC	5 cut(s)	90, 309, 317, 343, 442
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	4 cut(s)	18, 62, 227, 280
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	2 cut(s)	31, 337
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	1 cut(s)	238
Sse9I	AATT	2 cut(s)	303, 401
SsiI	CCGC	4 cut(s)	157, 160, 171, 241
StyD4I	CCNGG	4 cut(s)	16, 60, 225, 278
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	303, 401
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	4, 162
Tsp45I	GTSAC	1 cut(s)	50
TspGWI	ACGGA	2 cut(s)	69, 361
Tth111I	GACNNNGTC	3 cut(s)	140, 182, 280
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.