Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

67084728 .. 67087784

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG429800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGATTACAAGTGCCAATTTTAGAAAGAAGCTCGCAACGTCGCCGGAATGGGTTGGGTCGTCGTGGAGGCCAGGAGATTTTGTTGGATCCAGTTTTGGAGATCGTCTCCGAGCGCCTCCGCCTCTGCTTCACCACCTGCGACACCGTCAACTGCACCGACTCCCTCTTTGACAATCTCAACGCCGGCCATGGAGCCGAGGACCGCAAGAAGGACCACCACCACAAAATCATCACCAGCGACTCTTATGCTAGAGACGACGGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTCGGATCTTCATGGTTGGTTCCTTATATTCGAGTCCAGTTTGGCAGAGGCCCGACGCGATGAAATGTTCACCGGAGGGCAGGGGCAGTGAGGCGAATCCATACAACCGTGCGAATCGCTCTCTCTCTTTTCGGATCTCGGCCCAGATAGCACCTCACTACGTGCCTACCCGCCACGTGGGGAATATTATACAGCATATTTTGGCACAAACGTCACCCGATCCCAAACTCACTCCAATTTCCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

182

Amino Acids

20.37

Weight (kDa)

9.45

Isoelectric Point (pI)

65.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	1 cut(s)	359
AciI	CCGC	3 cut(s)	121, 205, 472
AclWI	GGATC	5 cut(s)	83, 96, 314, 443, 515
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	300
AcvI	CACGTG	1 cut(s)	478
AdeI	CACNNNGTG	1 cut(s)	463
AfiI	CCNNNNNNNGG	3 cut(s)	211, 282, 478
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	112, 249
AlwI	GGATC	5 cut(s)	83, 96, 314, 443, 515
AoxI	GGCC	4 cut(s)	70, 187, 350, 441
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	4 cut(s)	202, 214, 351, 442
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	4 cut(s)	124, 226, 363, 507
AvaII	GGWCC	2 cut(s)	202, 214
BamHI	GGATCC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	263
BbrPI	CACGTG	1 cut(s)	478
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	112, 249
BfaI	CTAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	74, 277
Bme18I	GGWCC	2 cut(s)	202, 214
BmgT120I	GGNCC	4 cut(s)	202, 214, 351, 442
BmiI	GGNNCC	4 cut(s)	90, 196, 265, 322
BmrFI	CCNGG	2 cut(s)	74, 277
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpuMI	CCSGG	1 cut(s)	277
BsaAI	YACGTR	2 cut(s)	463, 478
BsaJI	CCNNGG	2 cut(s)	190, 198
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 282, 478
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	92, 338
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	190, 198
BseLI	CCNNNNNNNGG	3 cut(s)	211, 282, 478
BseNI	ACTGG	2 cut(s)	92, 338
BsgI	GTGCAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	4 cut(s)	72, 189, 352, 443
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	4 cut(s)	46, 186, 277, 374
BslI	CCNNNNNNNGG	3 cut(s)	211, 282, 478
BsmAI	GTCTC	2 cut(s)	112, 249
BsmBI	CGTCTC	2 cut(s)	112, 249
BsnI	GGCC	4 cut(s)	72, 189, 352, 443
Bsp143I	GATC	5 cut(s)	88, 102, 306, 435, 520
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	3 cut(s)	121, 205, 472
BspANI	GGCC	4 cut(s)	72, 189, 352, 443
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	4 cut(s)	90, 196, 265, 322
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	5 cut(s)	83, 96, 314, 443, 515
BspT107I	GGYRCC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	92, 338
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	190, 198
BssMI	GATC	5 cut(s)	88, 102, 306, 435, 520
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	3 cut(s)	148, 263, 410
BstBAI	YACGTR	2 cut(s)	463, 478
BstC8I	GCNNGC	2 cut(s)	35, 187
BstDSI	CCRYGG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	359
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	5 cut(s)	91, 105, 309, 438, 523
BstMAI	GTCTC	2 cut(s)	112, 249
BstMBI	GATC	5 cut(s)	88, 102, 306, 435, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	72, 275
BstUI	CGCG	1 cut(s)	359
BstX2I	RGATCY	3 cut(s)	88, 306, 435
BstYI	RGATCY	3 cut(s)	88, 306, 435
BsuRI	GGCC	4 cut(s)	72, 189, 352, 443
BtgI	CCRYGG	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	35, 187
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	4 cut(s)	202, 214, 351, 442
CseI	GACGC	1 cut(s)	365
CviAII	CATG	2 cut(s)	191, 313
CviJI	RGCY	7 cut(s)	33, 72, 189, 197, 286, 352, 443
CviKI_1	RGCY	7 cut(s)	33, 72, 189, 197, 286, 352, 443
DpnI	GATC	5 cut(s)	90, 104, 308, 437, 522
DpnII	GATC	5 cut(s)	88, 102, 306, 435, 520
DraIII	CACNNNGTG	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	202, 214
Eco72I	CACGTG	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	2 cut(s)	112, 249
FaeI	CATG	2 cut(s)	194, 316
FaiI	YATR	8 cut(s)	192, 249, 314, 328, 403, 491, 498, 547
FatI	CATG	2 cut(s)	190, 312
FauI	CCCGC	1 cut(s)	479
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	4 cut(s)	72, 189, 352, 443
HapII	CCGG	4 cut(s)	46, 186, 277, 374
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	194, 316
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	5 cut(s)	161, 242, 334, 397, 415
HpaII	CCGG	4 cut(s)	46, 186, 277, 374
HphI	GGTGA	4 cut(s)	124, 226, 363, 507
Hpy166II	GTNNAC	2 cut(s)	151, 371
Hpy188I	TCNGA	3 cut(s)	112, 306, 435
Hpy8I	GTNNAC	2 cut(s)	151, 371
Hpy99I	CGWCG	4 cut(s)	45, 66, 263, 359
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	3 cut(s)	148, 263, 410
HpyCH4IV	ACGT	4 cut(s)	40, 462, 477, 512
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpySE526I	ACGT	4 cut(s)	40, 462, 477, 512
Hsp92II	CATG	2 cut(s)	194, 316
HspAI	GCGC	1 cut(s)	115
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	88, 102, 306, 435, 520
LmnI	GCTCC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	4 cut(s)	40, 462, 477, 512
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	5 cut(s)	90, 104, 308, 437, 522
MboI	GATC	5 cut(s)	88, 102, 306, 435, 520
MboII	GAAGA	1 cut(s)	301
MflI	RGATCY	3 cut(s)	88, 306, 435
MluCI	AATT	3 cut(s)	18, 300, 537
MlyI	GAGTC	3 cut(s)	155, 236, 343
MmeI	TCCRAC	2 cut(s)	66, 277
MnlI	CCTC	9 cut(s)	62, 128, 134, 176, 193, 342, 370, 385, 465
MroNI	GCCGGC	1 cut(s)	185
MspI	CCGG	4 cut(s)	46, 186, 277, 374
MspR9I	CCNGG	2 cut(s)	74, 277
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	449
NaeI	GCCGGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	5 cut(s)	88, 102, 306, 435, 520
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	194, 316
NlaIV	GGNNCC	4 cut(s)	90, 196, 265, 322
NmeAIII	GCCGAG	2 cut(s)	223, 419
NmuCI	GTSAC	1 cut(s)	513
PaqCI	CACCTGC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	397, 415
PflFI	GACNNNGTC	2 cut(s)	146, 277
PleI	GAGTC	3 cut(s)	155, 236, 342
PmaCI	CACGTG	1 cut(s)	478
PmlI	CACGTG	1 cut(s)	478
PpsI	GAGTC	3 cut(s)	155, 236, 342
Ppu21I	YACGTR	2 cut(s)	463, 478
Psp6I	CCWGG	1 cut(s)	72
PspCI	CACGTG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	90, 196, 265, 322
PspPI	GGNCC	4 cut(s)	202, 214, 351, 442
PsuI	RGATCY	3 cut(s)	88, 306, 435
PsyI	GACNNNGTC	2 cut(s)	146, 277
Sau3AI	GATC	5 cut(s)	88, 102, 306, 435, 520
Sau96I	GGNCC	4 cut(s)	202, 214, 351, 442
SchI	GAGTC	3 cut(s)	155, 236, 343
ScrFI	CCNGG	2 cut(s)	74, 277
SetI	ASST	7 cut(s)	35, 43, 140, 457, 465, 480, 515
SinI	GGWCC	2 cut(s)	202, 214
Sse9I	AATT	3 cut(s)	18, 300, 537
SsiI	CCGC	3 cut(s)	121, 205, 472
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	72, 275
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	148, 263, 410
TaiI	ACGT	4 cut(s)	43, 465, 480, 515
TaqI	TCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	18, 300, 537
TfiI	GAWTC	2 cut(s)	397, 415
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	513
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	2 cut(s)	301, 377
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	2 cut(s)	146, 277
VpaK11BI	GGWCC	2 cut(s)	202, 214
XapI	RAATTY	1 cut(s)	300
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.