Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Forward (+)

404945 .. 407956

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG004600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGACATCGTCTCCGAGCGCCTCCGCCTCTGCTTCACCATCTGCGACACCGTCAACTGCACCGACTCCCTCTTTGACAATCTCAACGCTGACCATGGAGCCGAGGACCCCAAGAAGGACCACCACCACAAAATCGTCACCAGCGACTCTTATGCTGGAGACGACGATGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTCGGATCTTCATGAAAGAATTTGCTCAAGCCTCAGAAAGAGTGAAGTCTGTGGATCTGCATCCAACTGAGCCATGGTACGAAGAAATTTTTGGTCCAGTTCTTCCTGCTTTAATTTTCAAGAGTACAAAGCAGAAGCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

116

Amino Acids

13.13

Weight (kDa)

5.24

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	218, 267
AcsI	RAATTY	3 cut(s)	204, 224, 291
AfaI	GTAC	2 cut(s)	284, 331
AfiI	CCNNNNNNNGG	2 cut(s)	115, 186
AgsI	TTSAA	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	16, 153
AlwI	GGATC	2 cut(s)	218, 267
ApoI	RAATTY	3 cut(s)	204, 224, 291
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	3 cut(s)	106, 118, 299
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	28, 130
AvaII	GGWCC	3 cut(s)	106, 118, 299
BccI	CCATC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	16, 153
BfoI	RGCGCY	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	3 cut(s)	106, 118, 299
BmgT120I	GGNCC	3 cut(s)	106, 118, 299
BmiI	GGNNCC	2 cut(s)	100, 108
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	2 cut(s)	157, 274
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	94, 102, 278
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 186
Bse1I	ACTGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	94, 102, 278
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	115, 186
BseMII	CTCAG	2 cut(s)	252, 264
BseNI	ACTGG	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	115, 186
BsmAI	GTCTC	2 cut(s)	16, 153
BsmBI	CGTCTC	2 cut(s)	16, 153
Bsp143I	GATC	2 cut(s)	210, 259
Bsp19I	CCATGG	2 cut(s)	94, 278
BspACI	CCGC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	251, 265
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	100, 108
BspPI	GGATC	2 cut(s)	218, 267
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	3 cut(s)	94, 102, 278
BssMI	GATC	2 cut(s)	210, 259
BssT1I	CCWWGG	2 cut(s)	94, 278
Bst4CI	ACNGT	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	238, 273
BstDSI	CCRYGG	2 cut(s)	94, 278
BstF5I	GGATG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	213, 262
BstMAI	GTCTC	2 cut(s)	16, 153
BstMBI	GATC	2 cut(s)	210, 259
BstSCI	CCNGG	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	210, 259
BstYI	RGATCY	2 cut(s)	210, 259
BtgI	CCRYGG	2 cut(s)	94, 278
BtsCI	GGATG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	3 cut(s)	106, 118, 299
Csp6I	GTAC	2 cut(s)	283, 330
CviAII	CATG	3 cut(s)	95, 217, 279
CviJI	RGCY	5 cut(s)	101, 190, 236, 277, 343
CviKI_1	RGCY	5 cut(s)	101, 190, 236, 277, 343
CviQI	GTAC	2 cut(s)	283, 330
DdeI	CTNAG	2 cut(s)	238, 273
DpnI	GATC	2 cut(s)	212, 261
DpnII	GATC	2 cut(s)	210, 259
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	94, 278
Eco47I	GGWCC	3 cut(s)	106, 118, 299
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	94, 278
ErhI	CCWWGG	2 cut(s)	94, 278
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	3 cut(s)	98, 220, 282
FaiI	YATR	4 cut(s)	96, 153, 218, 280
FatI	CATG	3 cut(s)	94, 216, 278
FokI	GGATG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	22
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	98, 220, 282
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	65, 146
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	28, 130
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	16, 210, 241
Hpy188III	TCNNGA	2 cut(s)	217, 325
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	60, 265
HpyF3I	CTNAG	2 cut(s)	238, 273
Hsp92II	CATG	3 cut(s)	98, 220, 282
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	210, 259
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	6 cut(s)	141, 154, 171, 194, 315, 324
LweI	GCATC	2 cut(s)	157, 274
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	212, 261
MboI	GATC	2 cut(s)	210, 259
MboII	GAAGA	3 cut(s)	205, 299, 299
MflI	RGATCY	2 cut(s)	210, 259
MluCI	AATT	5 cut(s)	204, 224, 291, 318, 346
MlyI	GAGTC	2 cut(s)	59, 140
MmeI	TCCRAC	2 cut(s)	181, 293
MnlI	CCTC	5 cut(s)	32, 38, 80, 97, 247
MseI	TTAA	2 cut(s)	317, 345
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	181
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	2 cut(s)	94, 278
NdeII	GATC	2 cut(s)	210, 259
NlaIII	CATG	3 cut(s)	98, 220, 282
NlaIV	GGNNCC	2 cut(s)	100, 108
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	136
PagI	TCATGA	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 168
PflFI	GACNNNGTC	3 cut(s)	8, 50, 181
PleI	GAGTC	2 cut(s)	59, 140
PpsI	GAGTC	2 cut(s)	59, 140
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	100, 108
PspPI	GGNCC	3 cut(s)	106, 118, 299
PspPPI	RGGWCCY	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	210, 259
PsyI	GACNNNGTC	3 cut(s)	8, 50, 181
RsaI	GTAC	2 cut(s)	284, 331
RsaNI	GTAC	2 cut(s)	283, 330
SaqAI	TTAA	2 cut(s)	317, 345
Sau3AI	GATC	2 cut(s)	210, 259
Sau96I	GGNCC	3 cut(s)	106, 118, 299
SchI	GAGTC	2 cut(s)	59, 140
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	1 cut(s)	345
SfaNI	GCATC	2 cut(s)	157, 274
SinI	GGWCC	3 cut(s)	106, 118, 299
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	5 cut(s)	204, 224, 291, 318, 346
SsiI	CCGC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	2 cut(s)	94, 278
TaaI	ACNGT	1 cut(s)	52
TasI	AATT	5 cut(s)	204, 224, 291, 318, 346
TatI	WGTACW	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	317, 345
Tru9I	TTAA	2 cut(s)	317, 345
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	205, 233
Tth111I	GACNNNGTC	3 cut(s)	8, 50, 181
VpaK11BI	GGWCC	3 cut(s)	106, 118, 299
XapI	RAATTY	3 cut(s)	204, 224, 291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.