Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

596312 .. 596920

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG009500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATTACATCCATATGCCATCAATTTTCTCTCCTCTCTCCCTATCCCTCTGCGATCTGCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCCTCTCCGATCTGCTTTCTCTCACCTCCGTCGTCATTTTCAAATTCTGCCGCCGGTCTCACCAGGCTCGCAACGTCGCCGGAATGGGTTGGGTCGTCGTGGAGGCCAGGAGATTTTGTTGGATCCAGTTTTGGAGATCGTCTCCGAGCGCCTCCGCCTCTGCTTCACCACCTGCGACACCGTCAACTGCACCGACTCCCTCTTTGACAATCTCAACGCCGGCCATGGAGCCGAGGACCGCAAGAAGGACCACCACCACAAAATCATCACCAGCGACTCTTATGCTAGAGACGACGGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTCGGATCTTCATGGTTGGTTCCTTATATTCGAGTCCAGTTTGGCAGGTTTGGCACAGTTTCGACTGCAACAAAAATGGAGAAGATGACATGGGTGCCCAGAGCTTTTCTCTGGGTGCCCAGATCAATTTATCTGTTTTTTTTTTTTTTTTTTTTCATAAAATGGTGCAGAATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

202

Amino Acids

22.74

Weight (kDa)

7.75

Isoelectric Point (pI)

67.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	2 cut(s)	275, 466
AccB1I	GGYRCC	3 cut(s)	392, 524, 545
AciI	CCGC	3 cut(s)	146, 250, 334
AclWI	GGATC	3 cut(s)	212, 225, 443
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	3 cut(s)	138, 429, 601
AfiI	CCNNNNNNNGG	2 cut(s)	340, 411
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	157, 201
AluBI	AGCT	1 cut(s)	534
AluI	AGCT	1 cut(s)	534
Alw26I	GTCTC	4 cut(s)	69, 157, 241, 378
AlwI	GGATC	3 cut(s)	212, 225, 443
AoxI	GGCC	2 cut(s)	199, 316
ApoI	RAATTY	3 cut(s)	138, 429, 601
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	331, 343
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	4 cut(s)	110, 147, 253, 355
AvaII	GGWCC	2 cut(s)	331, 343
BaeGI	GKGCMC	2 cut(s)	529, 550
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	3 cut(s)	392, 524, 545
BccI	CCATC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	2 cut(s)	159, 203
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	4 cut(s)	69, 157, 241, 378
BfaI	CTAG	2 cut(s)	381, 607
BfmI	CTRYAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	247
BfuAI	ACCTGC	2 cut(s)	275, 466
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	3 cut(s)	159, 203, 406
Bme18I	GGWCC	2 cut(s)	331, 343
BmgT120I	GGNCC	2 cut(s)	331, 343
BmiI	GGNNCC	6 cut(s)	219, 325, 394, 451, 526, 547
BmrFI	CCNGG	3 cut(s)	159, 203, 406
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 523, 555
BpuMI	CCSGG	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	319, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 411
Bse118I	RCCGGY	2 cut(s)	148, 314
Bse1I	ACTGG	2 cut(s)	221, 467
BseBI	CCWGG	2 cut(s)	159, 203
BseDI	CCNNGG	2 cut(s)	319, 327
BseGI	GGATG	2 cut(s)	9, 93
BseLI	CCNNNNNNNGG	2 cut(s)	340, 411
BseNI	ACTGG	2 cut(s)	221, 467
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	2 cut(s)	529, 550
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	201, 318
BshNI	GGYRCC	3 cut(s)	392, 524, 545
BsiSI	CCGG	4 cut(s)	149, 175, 315, 406
BslI	CCNNNNNNNGG	2 cut(s)	340, 411
BsmAI	GTCTC	4 cut(s)	69, 157, 241, 378
BsmBI	CGTCTC	2 cut(s)	241, 378
BsnI	GGCC	2 cut(s)	201, 318
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	529, 550
Bsp143I	GATC	6 cut(s)	55, 104, 217, 231, 435, 552
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	3 cut(s)	146, 250, 334
BspANI	GGCC	2 cut(s)	201, 318
BspLI	GGNNCC	6 cut(s)	219, 325, 394, 451, 526, 547
BspMAI	CTGCAG	1 cut(s)	63
BspMI	ACCTGC	2 cut(s)	275, 466
BspPI	GGATC	3 cut(s)	212, 225, 443
BspT107I	GGYRCC	3 cut(s)	392, 524, 545
BspTNI	GGTCTC	1 cut(s)	157
BsrFI	RCCGGY	2 cut(s)	148, 314
BsrI	ACTGG	2 cut(s)	221, 467
BssAI	RCCGGY	2 cut(s)	148, 314
BssECI	CCNNGG	2 cut(s)	319, 327
BssMI	GATC	6 cut(s)	55, 104, 217, 231, 435, 552
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	2 cut(s)	159, 203
Bst4CI	ACNGT	3 cut(s)	277, 392, 488
BstC8I	GCNNGC	2 cut(s)	164, 316
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	9, 93
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	6 cut(s)	58, 107, 220, 234, 438, 555
BstMAI	GTCTC	4 cut(s)	69, 157, 241, 378
BstMBI	GATC	6 cut(s)	55, 104, 217, 231, 435, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	2 cut(s)	159, 203
BstSCI	CCNGG	3 cut(s)	157, 201, 404
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	2 cut(s)	529, 550
BstX2I	RGATCY	2 cut(s)	217, 435
BstYI	RGATCY	2 cut(s)	217, 435
BsuRI	GGCC	2 cut(s)	201, 318
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	9, 93
BveI	ACCTGC	2 cut(s)	275, 466
Cac8I	GCNNGC	2 cut(s)	164, 316
CfoI	GCGC	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	148, 314
Cfr13I	GGNCC	2 cut(s)	331, 343
CviAII	CATG	3 cut(s)	320, 442, 520
CviJI	RGCY	6 cut(s)	162, 201, 318, 326, 415, 534
CviKI_1	RGCY	6 cut(s)	162, 201, 318, 326, 415, 534
DpnI	GATC	6 cut(s)	57, 106, 219, 233, 437, 554
DpnII	GATC	6 cut(s)	55, 104, 217, 231, 435, 552
EaeI	YGGCCR	1 cut(s)	316
EciI	GGCGGA	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	331, 343
EcoRI	GAATTC	2 cut(s)	429, 601
EcoRII	CCWGG	2 cut(s)	157, 201
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
Esp3I	CGTCTC	2 cut(s)	241, 378
FaeI	CATG	3 cut(s)	323, 445, 523
FaiI	YATR	8 cut(s)	15, 17, 321, 378, 443, 457, 521, 588
FatI	CATG	3 cut(s)	319, 441, 519
FauNDI	CATATG	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	2 cut(s)	381, 607
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	201, 318
HapII	CCGG	4 cut(s)	149, 175, 315, 406
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	323, 445, 523
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	3 cut(s)	290, 371, 463
HpaII	CCGG	4 cut(s)	149, 175, 315, 406
HphI	GGTGA	4 cut(s)	110, 147, 253, 355
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	104, 241, 435
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	4 cut(s)	129, 174, 195, 392
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	3 cut(s)	277, 392, 488
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	61, 285, 498, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	3 cut(s)	323, 445, 523
HspAI	GCGC	1 cut(s)	244
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	6 cut(s)	55, 104, 217, 231, 435, 552
LmnI	GCTCC	1 cut(s)	323
MaeI	CTAG	2 cut(s)	381, 607
MaeII	ACGT	1 cut(s)	169
MalI	GATC	6 cut(s)	57, 106, 219, 233, 437, 554
MboI	GATC	6 cut(s)	55, 104, 217, 231, 435, 552
MboII	GAAGA	2 cut(s)	430, 524
MflI	RGATCY	2 cut(s)	217, 435
MhlI	GDGCHC	2 cut(s)	529, 550
MluCI	AATT	6 cut(s)	4, 24, 138, 429, 556, 601
MlyI	GAGTC	3 cut(s)	284, 365, 472
MmeI	TCCRAC	2 cut(s)	195, 406
MnlI	CCTC	9 cut(s)	45, 59, 108, 131, 191, 257, 263, 305, 322
MroNI	GCCGGC	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	4 cut(s)	149, 175, 315, 406
MspR9I	CCNGG	3 cut(s)	159, 203, 406
MvaI	CCWGG	2 cut(s)	159, 203
MwoI	GCNNNNNNNGC	1 cut(s)	481
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	406
NcoI	CCATGG	1 cut(s)	319
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	6 cut(s)	55, 104, 217, 231, 435, 552
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	3 cut(s)	323, 445, 523
NlaIV	GGNNCC	6 cut(s)	219, 325, 394, 451, 526, 547
NmeAIII	GCCGAG	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PdiI	GCCGGC	1 cut(s)	316
PflFI	GACNNNGTC	2 cut(s)	275, 406
PkrI	GCNGC	1 cut(s)	147
PleI	GAGTC	3 cut(s)	284, 365, 471
PpsI	GAGTC	3 cut(s)	284, 365, 471
Psp6I	CCWGG	2 cut(s)	157, 201
PspGI	CCWGG	2 cut(s)	157, 201
PspN4I	GGNNCC	6 cut(s)	219, 325, 394, 451, 526, 547
PspPI	GGNCC	2 cut(s)	331, 343
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	217, 435
PsyI	GACNNNGTC	2 cut(s)	275, 406
RseI	CAYNNNNRTG	1 cut(s)	14
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	6 cut(s)	55, 104, 217, 231, 435, 552
Sau96I	GGNCC	2 cut(s)	331, 343
SchI	GAGTC	3 cut(s)	284, 365, 472
ScrFI	CCNGG	3 cut(s)	159, 203, 406
SduI	GDGCHC	2 cut(s)	529, 550
SetI	ASST	5 cut(s)	123, 172, 269, 480, 536
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	331, 343
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	4, 24, 138, 429, 556, 601
SsiI	CCGC	3 cut(s)	146, 250, 334
SspMI	CTAG	2 cut(s)	381, 607
StyD4I	CCNGG	3 cut(s)	157, 201, 404
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	277, 392, 488
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	461, 492
TasI	AATT	6 cut(s)	4, 24, 138, 429, 556, 601
TauI	GCSGC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	17, 430, 575
TspGWI	ACGGA	1 cut(s)	113
Tth111I	GACNNNGTC	2 cut(s)	275, 406
VpaK11BI	GGWCC	2 cut(s)	331, 343
XapI	RAATTY	3 cut(s)	138, 429, 601
XspI	CTAG	2 cut(s)	381, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.