Rroxscaffold_3G00226050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005931
Physical Location & Seq
Forward (+)
9510170 .. 9520463
10294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226050.1

Sequence Viewer

Length: 480 bp
ATGCAAAGGCCTTCACTGGGGGATGTCCACGTGGCAAGTCGTGAGCTTGACAGGTTGTGTATCCCAGGAAAAGAATTCGCCACGTCGCCGAAATGGTTTAGGTCATCGAGGAGGCCGGGAGATTTCGTCGGAGCCGAGTTTTGGAGATCGTCTGCGAGCACTTGTTATGGACAGAGGCAACGCCGATTATGGACATCGTCTCCAAGCACCTCCACCGCGCTTCACTGCTGCGACTTCATCAATCGCACCGACTTCCGCTCCGACAATGTCAATGCGGCCGTGGAGCCGAGGACCGCAAGAAGGACCACCACCGCAAAATCATCACCAGCAACTCTTATGCCGGATACTACGTCAAACTCACAACCTCCCACTTACAAAGGGGAGACTTATGCCACTATATCAAATGCAATTCGTCGATTTGTTTTCGACCGCGCAGAGCTATTCCCCCCCCCTAAAATCCCAATCGGGTTTTCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.89

Weight (kDa)

10.21

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 258
AccII CGCG 2 cut(s) 218, 432
AciI CCGC 6 cut(s) 216, 256, 275, 294, 312, 430
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 74
AcvI CACGTG 1 cut(s) 31
AfiI CCNNNNNNNGG 3 cut(s) 17, 141, 300
AjiI CACGTC 1 cut(s) 84
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 1 cut(s) 454
AluBI AGCT 2 cut(s) 46, 439
AluI AGCT 2 cut(s) 46, 439
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 204, 377
AoxI GGCC 3 cut(s) 8, 113, 276
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 2 cut(s) 220, 434
AspS9I GGNCC 2 cut(s) 291, 303
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 315
AvaII GGWCC 2 cut(s) 291, 303
BbrPI CACGTG 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 66
BciVI GTATCC 2 cut(s) 71, 337
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 204, 377
BfuI GTATCC 2 cut(s) 71, 337
BisI GCNGC 2 cut(s) 229, 276
BlsI GCNGC 2 cut(s) 230, 277
Bme1390I CCNGG 2 cut(s) 66, 117
Bme18I GGWCC 2 cut(s) 291, 303
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 291, 303
BmiI GGNNCC 2 cut(s) 133, 285
BmrFI CCNGG 2 cut(s) 66, 117
BmrI ACTGGG 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 3 cut(s) 64, 279, 287
BsaXI ACNNNNNCTCC 6 cut(s) 111, 141, 184, 214, 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 141, 300
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 3 cut(s) 64, 279, 287
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 17, 141, 300
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 124
BseX3I CGGCCG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 215
Bsh1236I CGCG 2 cut(s) 218, 432
Bsh1285I CGRYCG 2 cut(s) 279, 430
BshFI GGCC 3 cut(s) 10, 115, 278
BsiEI CGRYCG 2 cut(s) 279, 430
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 2 cut(s) 116, 341
BslI CCNNNNNNNGG 3 cut(s) 17, 141, 300
BsmAI GTCTC 2 cut(s) 204, 377
BsmBI CGTCTC 1 cut(s) 204
BsnI GGCC 3 cut(s) 10, 115, 278
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 146
BspACI CCGC 6 cut(s) 216, 256, 275, 294, 312, 430
BspANI GGCC 3 cut(s) 10, 115, 278
BspFNI CGCG 2 cut(s) 218, 432
BspLI GGNNCC 2 cut(s) 133, 285
BsrBI CCGCTC 1 cut(s) 258
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 3 cut(s) 64, 279, 287
BssMI GATC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 157
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 2 cut(s) 218, 432
BstHHI GCGC 2 cut(s) 220, 434
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 2 cut(s) 204, 377
BstMBI GATC 1 cut(s) 146
BstMCI CGRYCG 2 cut(s) 279, 430
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 64, 115
BstUI CGCG 2 cut(s) 218, 432
BstV1I GCAGC 1 cut(s) 215
BstZI CGGCCG 1 cut(s) 276
BsuI GTATCC 2 cut(s) 71, 337
BsuRI GGCC 3 cut(s) 10, 115, 278
BtgI CCRYGG 1 cut(s) 279
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 14, 223
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 2 cut(s) 220, 434
Cfr13I GGNCC 2 cut(s) 291, 303
CviJI RGCY 7 cut(s) 10, 46, 115, 134, 278, 286, 439
CviKI_1 RGCY 7 cut(s) 10, 46, 115, 134, 278, 286, 439
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 276
EagI CGGCCG 1 cut(s) 276
EclXI CGGCCG 1 cut(s) 276
Eco147I AGGCCT 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 291, 303
Eco52I CGGCCG 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 204
FaiI YATR 5 cut(s) 168, 190, 338, 390, 398
Fnu4HI GCNGC 2 cut(s) 229, 276
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 229, 276
GlaI GCGC 2 cut(s) 219, 433
GluI GCNGC 2 cut(s) 229, 276
HaeIII GGCC 3 cut(s) 10, 115, 278
HapII CCGG 2 cut(s) 116, 341
HhaI GCGC 2 cut(s) 220, 434
Hin6I GCGC 2 cut(s) 218, 432
HinP1I GCGC 2 cut(s) 218, 432
HpaII CCGG 2 cut(s) 116, 341
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 131, 262
Hpy188III TCNNGA 2 cut(s) 41, 474
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 3 cut(s) 88, 131, 417
HpyAV CCTTC 2 cut(s) 21, 294
HpyCH4IV ACGT 3 cut(s) 30, 83, 350
HpyCH4V TGCA 2 cut(s) 4, 407
HpySE526I ACGT 3 cut(s) 30, 83, 350
HspAI GCGC 2 cut(s) 218, 432
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 3 cut(s) 131, 263, 283
LpnPI CCDG 7 cut(s) 2, 37, 51, 78, 129, 339, 354
Lsp1109I GCAGC 1 cut(s) 215
MaeII ACGT 3 cut(s) 30, 83, 350
MalI GATC 1 cut(s) 148
MbiI CCGCTC 1 cut(s) 258
MboI GATC 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 74, 408
MmeI TCCRAC 2 cut(s) 109, 285
MnlI CCTC 6 cut(s) 102, 105, 168, 220, 282, 375
MspI CCGG 2 cut(s) 116, 341
MspR9I CCNGG 2 cut(s) 66, 117
MvaI CCWGG 1 cut(s) 66
MvnI CGCG 2 cut(s) 218, 432
NciI CCSGG 1 cut(s) 117
NdeII GATC 1 cut(s) 146
NlaIV GGNNCC 2 cut(s) 133, 285
NmeAIII GCCGAG 2 cut(s) 160, 312
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PflFI GACNNNGTC 2 cut(s) 196, 266
PkrI GCNGC 2 cut(s) 230, 277
PmaCI CACGTG 1 cut(s) 31
PmlI CACGTG 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 64
PspCI CACGTG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 133, 285
PspPI GGNCC 2 cut(s) 291, 303
PsyI GACNNNGTC 2 cut(s) 196, 266
SatI GCNGC 2 cut(s) 229, 276
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 2 cut(s) 291, 303
ScrFI CCNGG 2 cut(s) 66, 117
SduI GDGCHC 1 cut(s) 161
SetI ASST 9 cut(s) 33, 48, 56, 86, 104, 212, 353, 367, 441
SinI GGWCC 2 cut(s) 291, 303
Sse9I AATT 2 cut(s) 74, 408
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 6 cut(s) 216, 256, 275, 294, 312, 430
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 64, 115
TaiI ACGT 3 cut(s) 33, 86, 353
TaqI TCGA 4 cut(s) 107, 415, 426, 475
TasI AATT 2 cut(s) 74, 408
TauI GCSGC 1 cut(s) 278
TscAI CASTG 2 cut(s) 21, 230
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 226
TspRI CASTG 2 cut(s) 21, 230
Tth111I GACNNNGTC 2 cut(s) 196, 266
VpaK11BI GGWCC 2 cut(s) 291, 303
XapI RAATTY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.