Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

15179436 .. 15182147

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG163900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGACATCGTCTCTGAGCGCCTCCACCTCTGCTTCACCGCCTGCGACACCGTCAATTGCACCGACTCCCTCTTTGACAATCTCAACGCCGGCCATGGAGCCGAGGACCGCAAGAAGGACCACCACCACAAAATCATCACCAGCGACTCTTATGCTGGAGACGACGGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTCGGATCTTCATGCGCATAAACACAACTAAAGAAGAAGAGACAGTAGTCACTCAGAGTACGCTTTCACCAAAAGAGATAGGGAAGAAGAGACAGTGGATTGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

104

Amino Acids

11.69

Weight (kDa)

6.5

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	167
AciI	CCGC	2 cut(s)	39, 109
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	204
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	115, 186
Alw26I	GTCTC	4 cut(s)	16, 153, 239, 289
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	2 cut(s)	21, 222
AspS9I	GGNCC	2 cut(s)	106, 118
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	28, 130, 264
AvaII	GGWCC	2 cut(s)	106, 118
BanI	GGYRCC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	4 cut(s)	16, 153, 239, 289
BfoI	RGCGCY	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	2 cut(s)	106, 118
BmgT120I	GGNCC	2 cut(s)	106, 118
BmiI	GGNNCC	2 cut(s)	100, 169
BmrFI	CCNGG	1 cut(s)	181
BoxI	GACNNNNGTC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	94, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 186
Bse118I	RCCGGY	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	94, 102
BseLI	CCNNNNNNNGG	2 cut(s)	115, 186
BseMII	CTCAG	2 cut(s)	6, 272
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	90, 181
BslI	CCNNNNNNNGG	2 cut(s)	115, 186
BsmAI	GTCTC	4 cut(s)	16, 153, 239, 289
BsmBI	CGTCTC	2 cut(s)	16, 153
BsnI	GGCC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	2 cut(s)	39, 109
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	7, 271
BspLI	GGNNCC	2 cut(s)	100, 169
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	94, 102
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	4 cut(s)	52, 167, 250, 300
Bst6I	CTCTTC	2 cut(s)	237, 287
BstC8I	GCNNGC	2 cut(s)	43, 91
BstDEI	CTNAG	2 cut(s)	15, 258
BstDSI	CCRYGG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	2 cut(s)	21, 222
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	4 cut(s)	16, 153, 239, 289
BstMBI	GATC	1 cut(s)	210
BstPAI	GACNNNNGTC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	43, 91
CfoI	GCGC	2 cut(s)	21, 222
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	106, 118
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	95, 217
CviJI	RGCY	3 cut(s)	93, 101, 190
CviKI_1	RGCY	3 cut(s)	93, 101, 190
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	15, 258
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	237, 287
EarI	CTCTTC	2 cut(s)	237, 287
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	106, 118
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	2 cut(s)	98, 220
FaiI	YATR	4 cut(s)	96, 153, 218, 224
FatI	CATG	2 cut(s)	94, 216
FspAI	RTGCGCAY	1 cut(s)	221
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	2 cut(s)	20, 221
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	90, 181
HhaI	GCGC	2 cut(s)	21, 222
Hin1II	CATG	2 cut(s)	98, 220
Hin6I	GCGC	2 cut(s)	19, 220
HinP1I	GCGC	2 cut(s)	19, 220
HinfI	GANTC	2 cut(s)	65, 146
HpaII	CCGG	2 cut(s)	90, 181
HphI	GGTGA	3 cut(s)	28, 130, 264
Hpy188I	TCNGA	3 cut(s)	16, 210, 261
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	4 cut(s)	52, 167, 250, 300
HpyCH4V	TGCA	1 cut(s)	60
HpyF3I	CTNAG	2 cut(s)	15, 258
Hsp92II	CATG	2 cut(s)	98, 220
HspAI	GCGC	2 cut(s)	19, 220
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	6 cut(s)	55, 103, 141, 154, 171, 194
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	5 cut(s)	205, 251, 254, 301, 304
MfeI	CAATTG	1 cut(s)	55
MflI	RGATCY	1 cut(s)	210
MluCI	AATT	2 cut(s)	55, 204
MlyI	GAGTC	2 cut(s)	59, 140
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	32, 38, 80, 97
MroNI	GCCGGC	1 cut(s)	89
MspI	CCGG	2 cut(s)	90, 181
MspR9I	CCNGG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	55
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	210
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	98, 220
NlaIV	GGNNCC	2 cut(s)	100, 169
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	253
NsbI	TGCGCA	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	91
PflFI	GACNNNGTC	3 cut(s)	8, 50, 181
PleI	GAGTC	2 cut(s)	59, 140
PpsI	GAGTC	2 cut(s)	59, 140
PshAI	GACNNNNGTC	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	100, 169
PspPI	GGNCC	2 cut(s)	106, 118
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	3 cut(s)	8, 50, 181
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	106, 118
SchI	GAGTC	2 cut(s)	59, 140
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	1 cut(s)	30
SinI	GGWCC	2 cut(s)	106, 118
Sse9I	AATT	2 cut(s)	55, 204
SsiI	CCGC	2 cut(s)	39, 109
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	4 cut(s)	52, 167, 250, 300
TasI	AATT	2 cut(s)	55, 204
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	305
Tth111I	GACNNNGTC	3 cut(s)	8, 50, 181
VpaK11BI	GGWCC	2 cut(s)	106, 118
XapI	RAATTY	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.