Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

43643001 .. 43646741

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG230200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGACATCGTCTCCGAGCGTCTCCGCCTTTGCTTCACCGCCTGCGACACCGTCAACTGCACCGACTCCCTCTTTGACAATCTCAATGCCAGCCATGGAGCCGAGGACCGCAAGAAGGACCACCACCACAAAATCATCACCAACCACTCTTATGCTGGAGACGACGGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTTGGATCTTCATGGGTGAGCCGATCTACAAAACCCACATGGCCATAGGACGGGAAATTAGCCAACGCGCCATCACCAATGGTTTGCTGACTTCAACAGCTGTCGATCGTGTTCTGCAAAAGGTTTTTCTCAGATGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

115

Amino Acids

12.86

Weight (kDa)

7.0

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	273
AciI	CCGC	3 cut(s)	25, 39, 109
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	204
AfiI	CCNNNNNNNGG	3 cut(s)	115, 186, 255
AgsI	TTSAA	1 cut(s)	300
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	3 cut(s)	16, 26, 153
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	106, 118
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	4 cut(s)	28, 130, 233, 271
AvaII	GGWCC	2 cut(s)	106, 118
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	167
BccI	CCATC	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	3 cut(s)	16, 26, 153
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	2 cut(s)	106, 118
BmgT120I	GGNCC	2 cut(s)	106, 118
BmiI	GGNNCC	2 cut(s)	100, 169
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	94, 102
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 186, 255
BseDI	CCNNGG	2 cut(s)	94, 102
BseLI	CCNNNNNNNGG	3 cut(s)	115, 186, 255
BsgI	GTGCAG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	115, 186, 255
BsmAI	GTCTC	3 cut(s)	16, 26, 153
BsmBI	CGTCTC	3 cut(s)	16, 26, 153
BsnI	GGCC	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	210, 228, 310
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	25, 39, 109
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	100, 169
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	94, 102
BssMI	GATC	3 cut(s)	210, 228, 310
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	52, 167
BstC8I	GCNNGC	2 cut(s)	43, 91
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	213, 231, 313
BstMAI	GTCTC	3 cut(s)	16, 26, 153
BstMBI	GATC	3 cut(s)	210, 228, 310
BstMCI	CGRYCG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	43, 91
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	106, 118
CseI	GACGC	1 cut(s)	8
CviAII	CATG	3 cut(s)	95, 217, 244
CviJI	RGCY	7 cut(s)	93, 101, 190, 226, 248, 267, 305
CviKI_1	RGCY	7 cut(s)	93, 101, 190, 226, 248, 267, 305
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	3 cut(s)	212, 230, 312
DpnII	GATC	3 cut(s)	210, 228, 310
EaeI	YGGCCR	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	106, 118
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	3 cut(s)	16, 26, 153
FaeI	CATG	3 cut(s)	98, 220, 247
FaiI	YATR	5 cut(s)	96, 153, 218, 245, 251
FatI	CATG	3 cut(s)	94, 216, 243
GlaI	GCGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	98, 220, 247
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	4 cut(s)	28, 130, 233, 271
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	16, 338
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	52, 167
HpyCH4V	TGCA	3 cut(s)	60, 322, 342
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	98, 220, 247
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	210, 228, 310
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	5 cut(s)	55, 103, 141, 171, 194
LweI	GCATC	1 cut(s)	329
MalI	GATC	3 cut(s)	212, 230, 312
MboI	GATC	3 cut(s)	210, 228, 310
MboII	GAAGA	1 cut(s)	205
MflI	RGATCY	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	2 cut(s)	204, 261
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	80, 97
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	273
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	210, 228, 310
NlaIII	CATG	3 cut(s)	98, 220, 247
NlaIV	GGNNCC	2 cut(s)	100, 169
NmeAIII	GCCGAG	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PflFI	GACNNNGTC	3 cut(s)	8, 50, 181
Ple19I	CGATCG	1 cut(s)	313
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	100, 169
PspPI	GGNCC	2 cut(s)	106, 118
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	3 cut(s)	8, 50, 181
PvuI	CGATCG	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	210, 228, 310
Sau96I	GGNCC	2 cut(s)	106, 118
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	2 cut(s)	307, 330
SfaNI	GCATC	1 cut(s)	329
SinI	GGWCC	2 cut(s)	106, 118
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	204, 261
SsiI	CCGC	3 cut(s)	25, 39, 109
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	52, 167
TaqI	TCGA	1 cut(s)	309
TasI	AATT	2 cut(s)	204, 261
TspDTI	ATGAA	1 cut(s)	205
Tth111I	GACNNNGTC	3 cut(s)	8, 50, 181
VpaK11BI	GGWCC	2 cut(s)	106, 118
XapI	RAATTY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.