Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Forward (+)

52970358 .. 52974573

Gene Structure 4216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGACATCGTCTCCAAGCGCCTCCGCCGCTGCTTCACCGCCTGCGACACCATCTACTGCATCGGCTCCCTCTTCGACAATCTCAATGCCAGCCATGGAGCCGAGGACCGCAAGAAGGACCACCACCACAAAATCATCACCAGCGACTCTTATGCTGGAGATGACGGTGCCGACCCGAGGCGGTCAAGGCTTCGCCTTGTTGGAATTCGGATCTCCATGGTTGGTTCCTTATATTCTAGTCCAGTTTGGCAGGACATCGAGAAGATAAACATCCTGGCAGTCCAAACCCTCTGGAACAATAACATGGGACCAACCCTGATGTCTGAGCCTCATAGCCTCCGGTGTCGGGCCTCCTTGCGCGGCGCTAGCTCCTCCGCTTCACTGTGCCACCACGACTCTCTCACTCTGCGCGACTCTGCCTTAGTCTCTCTCTGCTTCACCGCGCACCTCCACTCCACTACTCCTTCAGCCTCCAGCCCACGGGTTCTCCACATTGAGACTTTGAGGTCGGATTGCCCTCGTAAGGAATTAAGTTCATCTCCAAATCTGCTCACAGCAAATTCTGAAAACCAATCTAGTGGTGGAAAATTTACACCTCTTAAGGACTTCGTGTGTCCCATAACTAGTACCCTTTTTGATGATCCAGTGACACTTGAGACTGGTCAGACATATGAGCGAAAGCCGTCCAAGAATGGCTTGATAGAGGAAACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

239

Amino Acids

26.26

Weight (kDa)

7.65

Isoelectric Point (pI)

62.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	3 cut(s)	360, 411, 443
AciI	CCGC	8 cut(s)	25, 28, 39, 109, 181, 360, 375, 441
AclWI	GGATC	2 cut(s)	218, 635
AcsI	RAATTY	3 cut(s)	204, 559, 587
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	5 cut(s)	115, 177, 346, 480, 523
AflII	CTTAAG	1 cut(s)	599
AhlI	ACTAGT	1 cut(s)	623
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	369
AluI	AGCT	1 cut(s)	369
Alw26I	GTCTC	4 cut(s)	16, 430, 491, 650
AlwI	GGATC	2 cut(s)	218, 635
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	3 cut(s)	204, 559, 587
AspLEI	GCGC	5 cut(s)	21, 360, 365, 411, 445
AspS9I	GGNCC	4 cut(s)	106, 118, 308, 348
AsuHPI	GGTGA	3 cut(s)	28, 130, 430
AsuNHI	GCTAGC	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	3 cut(s)	106, 118, 308
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	667
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	4 cut(s)	16, 430, 491, 650
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	4 cut(s)	237, 366, 576, 624
BfoI	RGCGCY	2 cut(s)	22, 366
BfrI	CTTAAG	1 cut(s)	599
BisI	GCNGC	3 cut(s)	28, 31, 361
BlsI	GCNGC	3 cut(s)	29, 32, 362
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	3 cut(s)	106, 118, 308
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	4 cut(s)	106, 118, 308, 348
BmiI	GGNNCC	5 cut(s)	67, 100, 169, 226, 309
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	69
BmtI	GCTAGC	1 cut(s)	369
BpmI	CTGGAG	2 cut(s)	177, 457
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	269
BsaJI	CCNNGG	5 cut(s)	94, 102, 176, 216, 479
BsaWI	WCCGGW	1 cut(s)	339
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 437, 467, 471, 501
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 177, 346, 480, 523
Bse1I	ACTGG	3 cut(s)	242, 644, 664
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	5 cut(s)	94, 102, 176, 216, 479
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	5 cut(s)	115, 177, 346, 480, 523
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	3 cut(s)	242, 644, 664
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	3 cut(s)	360, 411, 443
BshFI	GGCC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	340
BslFI	GGGAC	2 cut(s)	321, 600
BslI	CCNNNNNNNGG	5 cut(s)	115, 177, 346, 480, 523
BsmAI	GTCTC	4 cut(s)	16, 430, 491, 650
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	321, 600
BsnI	GGCC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	210, 640
Bsp19I	CCATGG	2 cut(s)	94, 216
BspACI	CCGC	8 cut(s)	25, 28, 39, 109, 181, 360, 375, 441
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	3 cut(s)	360, 411, 443
BspLI	GGNNCC	5 cut(s)	67, 100, 169, 226, 309
BspOI	GCTAGC	1 cut(s)	369
BspPI	GGATC	2 cut(s)	218, 635
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	599
BsrI	ACTGG	3 cut(s)	242, 644, 664
BssECI	CCNNGG	5 cut(s)	94, 102, 176, 216, 479
BssMI	GATC	2 cut(s)	210, 640
BssT1I	CCWWGG	2 cut(s)	94, 216
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	167, 384
Bst6I	CTCTTC	1 cut(s)	77
BstAFI	CTTAAG	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	43, 91, 367
BstDEI	CTNAG	2 cut(s)	324, 421
BstDSI	CCRYGG	3 cut(s)	94, 216, 479
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	3 cut(s)	360, 411, 443
BstH2I	RGCGCY	2 cut(s)	22, 366
BstHHI	GCGC	5 cut(s)	21, 360, 365, 411, 445
BstKTI	GATC	2 cut(s)	213, 643
BstMAI	GTCTC	4 cut(s)	16, 430, 491, 650
BstMBI	GATC	2 cut(s)	210, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 187, 366
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstUI	CGCG	3 cut(s)	360, 411, 443
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	3 cut(s)	94, 216, 479
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	380, 651
Cac8I	GCNNGC	3 cut(s)	43, 91, 367
CfoI	GCGC	5 cut(s)	21, 360, 365, 411, 445
Cfr13I	GGNCC	4 cut(s)	106, 118, 308, 348
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	3 cut(s)	95, 217, 304
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	2 cut(s)	324, 421
DpnI	GATC	2 cut(s)	212, 642
DpnII	GATC	2 cut(s)	210, 640
DrdI	GACNNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	94, 216
Eco47I	GGWCC	3 cut(s)	106, 118, 308
Eco57I	CTGAAG	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	94, 216
ErhI	CCWWGG	2 cut(s)	94, 216
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	3 cut(s)	98, 220, 307
FaiI	YATR	9 cut(s)	96, 153, 218, 232, 305, 333, 620, 670, 672
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	2 cut(s)	321, 600
FatI	CATG	3 cut(s)	94, 216, 303
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	3 cut(s)	28, 31, 361
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	28, 31, 361
FspBI	CTAG	4 cut(s)	237, 366, 576, 624
GlaI	GCGC	5 cut(s)	20, 359, 364, 410, 444
GluI	GCNGC	3 cut(s)	28, 31, 361
GsuI	CTGGAG	2 cut(s)	177, 457
HaeII	RGCGCY	2 cut(s)	22, 366
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	1 cut(s)	340
HhaI	GCGC	5 cut(s)	21, 360, 365, 411, 445
Hin1II	CATG	3 cut(s)	98, 220, 307
Hin6I	GCGC	5 cut(s)	19, 358, 363, 409, 443
HinP1I	GCGC	5 cut(s)	19, 358, 363, 409, 443
HinfI	GANTC	3 cut(s)	146, 395, 413
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	3 cut(s)	28, 130, 430
Hpy188I	TCNGA	5 cut(s)	210, 325, 511, 565, 666
Hpy188III	TCNNGA	2 cut(s)	259, 292
HpyAV	CCTTC	2 cut(s)	109, 474
HpyCH4III	ACNGT	2 cut(s)	167, 384
HpyCH4V	TGCA	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 187, 366
HpyF3I	CTNAG	2 cut(s)	324, 421
Hsp92II	CATG	3 cut(s)	98, 220, 307
HspAI	GCGC	5 cut(s)	19, 358, 363, 409, 443
Kzo9I	GATC	2 cut(s)	210, 640
LmnI	GCTCC	3 cut(s)	71, 98, 374
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	4 cut(s)	237, 366, 576, 624
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	2 cut(s)	212, 642
MboI	GATC	2 cut(s)	210, 640
MboII	GAAGA	2 cut(s)	64, 274
MflI	RGATCY	1 cut(s)	210
MluCI	AATT	4 cut(s)	204, 527, 559, 587
MlyI	GAGTC	3 cut(s)	140, 389, 407
MmeI	TCCRAC	2 cut(s)	181, 489
MseI	TTAA	2 cut(s)	530, 600
MspA1I	CMGCKG	1 cut(s)	30
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	275
MteI	GCGCNGCGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	3 cut(s)	360, 411, 443
MwoI	GCNNNNNNNGC	3 cut(s)	27, 187, 366
NcoI	CCATGG	2 cut(s)	94, 216
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	2 cut(s)	210, 640
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	3 cut(s)	98, 220, 307
NlaIV	GGNNCC	5 cut(s)	67, 100, 169, 226, 309
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	646
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	29, 32, 362
PleI	GAGTC	3 cut(s)	140, 389, 407
PpsI	GAGTC	3 cut(s)	140, 389, 407
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	5 cut(s)	67, 100, 169, 226, 309
PspPI	GGNCC	4 cut(s)	106, 118, 308, 348
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	530, 600
SatI	GCNGC	3 cut(s)	28, 31, 361
Sau3AI	GATC	2 cut(s)	210, 640
Sau96I	GGNCC	4 cut(s)	106, 118, 308, 348
SchI	GAGTC	3 cut(s)	140, 389, 407
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	4 cut(s)	371, 450, 509, 598
SfaNI	GCATC	1 cut(s)	69
SinI	GGWCC	3 cut(s)	106, 118, 308
SmlI	CTYRAG	2 cut(s)	599, 653
SmoI	CTYRAG	2 cut(s)	599, 653
SpeI	ACTAGT	1 cut(s)	623
Sse9I	AATT	4 cut(s)	204, 527, 559, 587
SsiI	CCGC	8 cut(s)	25, 28, 39, 109, 181, 360, 375, 441
SspMI	CTAG	4 cut(s)	237, 366, 576, 624
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	2 cut(s)	94, 216
TaaI	ACNGT	2 cut(s)	167, 384
TaqI	TCGA	2 cut(s)	75, 258
TasI	AATT	4 cut(s)	204, 527, 559, 587
TauI	GCSGC	2 cut(s)	30, 363
Tru1I	TTAA	2 cut(s)	530, 600
Tru9I	TTAA	2 cut(s)	530, 600
TscAI	CASTG	2 cut(s)	387, 651
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	387, 651
Tth111I	GACNNNGTC	1 cut(s)	8
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	3 cut(s)	106, 118, 308
XapI	RAATTY	3 cut(s)	204, 559, 587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XspI	CTAG	4 cut(s)	237, 366, 576, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.