Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

61106701 .. 61108079

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGACATCGTCTCCGAGCGCCTCCGCCTCTGCTTCACCGCCTGCGACACCGTCAACTGCACCGACTCCCTCTTTGACAATCTCAACGCCGGCCATGGAGCCAAGGACCGCAAGAAGGACCACCACCACAAAATCATCACCAGCGACTCTTATGCTGGAGACGACGGTGCCGACCCGACCTGGAATAAGAAAAGGATCGGAGCAGCTTATCTTCAACCCATTAGCTATACAAATGGACTTCCTTACGGTGTTCATGCCAAGATAACCATAACTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

92

Amino Acids

10.15

Weight (kDa)

6.95

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AciI	CCGC	3 cut(s)	25, 39, 109
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	206, 225
AluI	AGCT	2 cut(s)	206, 225
Alw26I	GTCTC	2 cut(s)	16, 153
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	106, 118
AsuHPI	GGTGA	2 cut(s)	28, 130
AvaII	GGWCC	2 cut(s)	106, 118
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	16, 153
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	2 cut(s)	106, 118
BmgT120I	GGNCC	2 cut(s)	106, 118
BmiI	GGNNCC	2 cut(s)	100, 169
BmrFI	CCNGG	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	94, 102
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	94, 102
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	16, 153
BsmBI	CGTCTC	2 cut(s)	16, 153
BsnI	GGCC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	25, 39, 109
BspANI	GGCC	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	100, 169
BspPI	GGATC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	94, 102
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	94, 102
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	3 cut(s)	52, 167, 248
BstC8I	GCNNGC	2 cut(s)	43, 91
BstDSI	CCRYGG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	2 cut(s)	16, 153
BstMBI	GATC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	43, 91
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	106, 118
CviAII	CATG	2 cut(s)	95, 254
CviJI	RGCY	4 cut(s)	93, 101, 206, 225
CviKI_1	RGCY	4 cut(s)	93, 101, 206, 225
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	94, 102
Eco47I	GGWCC	2 cut(s)	106, 118
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	94, 102
ErhI	CCWWGG	2 cut(s)	94, 102
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	2 cut(s)	98, 257
FaiI	YATR	5 cut(s)	96, 153, 228, 255, 269
FatI	CATG	2 cut(s)	94, 253
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	98, 257
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	65, 146
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	28, 130
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	16, 200
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	3 cut(s)	52, 167, 248
HpyCH4V	TGCA	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	98, 257
HspAI	GCGC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	98, 200
LpnPI	CCDG	6 cut(s)	55, 103, 141, 154, 166, 193
Lsp1109I	GCAGC	1 cut(s)	215
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	1 cut(s)	203
MlyI	GAGTC	2 cut(s)	59, 140
MnlI	CCTC	3 cut(s)	32, 38, 80
MroNI	GCCGGC	1 cut(s)	89
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
NaeI	GCCGGC	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	98, 257
NlaIV	GGNNCC	2 cut(s)	100, 169
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	91
PflFI	GACNNNGTC	2 cut(s)	8, 50
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	59, 140
PpsI	GAGTC	2 cut(s)	59, 140
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	100, 169
PspPI	GGNCC	2 cut(s)	106, 118
PsyI	GACNNNGTC	2 cut(s)	8, 50
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	2 cut(s)	106, 118
SchI	GAGTC	2 cut(s)	59, 140
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	3 cut(s)	182, 208, 227
SinI	GGWCC	2 cut(s)	106, 118
SsiI	CCGC	3 cut(s)	25, 39, 109
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	2 cut(s)	94, 102
TaaI	ACNGT	3 cut(s)	52, 167, 248
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	264
Tth111I	GACNNNGTC	2 cut(s)	8, 50
VpaK11BI	GGWCC	2 cut(s)	106, 118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.