Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Forward (+)

15247276 .. 15247689

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG170500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCGCCGGTCTCACCAGGCTCGCCACGTCGCCGGAATGGTTTGGGTAGCGGAGGCCAGGAGATTTCGTCGGAGCCAGTTTTGGAGATCGTCTCCGAGCACCGGTTATGGACAGAGGCGACGCCGGTTATGGACATCGTCTCCAAGCGCCTCCGCCGCTACTTCACCGCCTGCGACATCTTCAACTCCACCAGCTCCCGCTTCAACAATCTCAATGCTGGCCAGGGAGCAGAGGACCGCAAGAAGGACCACCACTACAAAATCATCACCAGCAACTCTTATGCTGGATACGACGGTGCCGACCCGACCCGGTCAGGGCTTTGCCTTGTTGGAATTTGGATCTCCATGGTTGGTTCCTTATATTCGAGTCCAGTTTGGCACAGTTTCGAGTCCTGCAATTTTGATTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

137

Amino Acids

15.2

Weight (kDa)

6.89

Isoelectric Point (pI)

77.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	7 cut(s)	5, 51, 154, 157, 168, 199, 238
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	102, 244, 315
AgeI	ACCGGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	184, 205
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	3 cut(s)	16, 57, 222
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	3 cut(s)	16, 97, 145
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	2 cut(s)	55, 220
ApoI	RAATTY	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	235, 247
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	3 cut(s)	6, 157, 259
AvaII	GGWCC	2 cut(s)	235, 247
BaeI	ACNNNNGTAYC	2 cut(s)	280, 313
BalI	TGGCCA	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	102
BciT130I	CCWGG	3 cut(s)	18, 59, 224
BciVI	GTATCC	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	16, 97, 145
BfoI	RGCGCY	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	5, 157
BlsI	GCNGC	2 cut(s)	6, 158
Bme1390I	CCNGG	4 cut(s)	18, 59, 224, 310
Bme18I	GGWCC	2 cut(s)	235, 247
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	235, 247
BmiI	GGNNCC	3 cut(s)	75, 298, 355
BmrFI	CCNGG	4 cut(s)	18, 59, 224, 310
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpuMI	CCSGG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	223, 345
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 125, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 244, 315
Bse118I	RCCGGY	3 cut(s)	7, 102, 124
Bse1I	ACTGG	2 cut(s)	77, 371
BseBI	CCWGG	3 cut(s)	18, 59, 224
BseDI	CCNNGG	2 cut(s)	223, 345
BseLI	CCNNNNNNNGG	3 cut(s)	102, 244, 315
BseNI	ACTGG	2 cut(s)	77, 371
BshFI	GGCC	2 cut(s)	57, 222
BshNI	GGYRCC	1 cut(s)	296
BshTI	ACCGGT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	5 cut(s)	8, 34, 103, 125, 310
BslI	CCNNNNNNNGG	3 cut(s)	102, 244, 315
BsmAI	GTCTC	3 cut(s)	16, 97, 145
BsmBI	CGTCTC	2 cut(s)	97, 145
BsnI	GGCC	2 cut(s)	57, 222
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	87, 339
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	7 cut(s)	5, 51, 154, 157, 168, 199, 238
BspANI	GGCC	2 cut(s)	57, 222
BspLI	GGNNCC	3 cut(s)	75, 298, 355
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	16
BsrFI	RCCGGY	3 cut(s)	7, 102, 124
BsrI	ACTGG	2 cut(s)	77, 371
BssAI	RCCGGY	3 cut(s)	7, 102, 124
BssECI	CCNNGG	2 cut(s)	223, 345
BssMI	GATC	2 cut(s)	87, 339
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	3 cut(s)	18, 59, 224
Bst4CI	ACNGT	2 cut(s)	296, 383
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	23, 172, 220
BstDSI	CCRYGG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	2 cut(s)	90, 342
BstMAI	GTCTC	3 cut(s)	16, 97, 145
BstMBI	GATC	2 cut(s)	87, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	3 cut(s)	18, 59, 224
BstSCI	CCNGG	4 cut(s)	16, 57, 222, 308
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	57, 222
BtgI	CCRYGG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	23, 172, 220
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	3 cut(s)	7, 102, 124
Cfr13I	GGNCC	2 cut(s)	235, 247
CseI	GACGC	1 cut(s)	130
CspAI	ACCGGT	1 cut(s)	102
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	6 cut(s)	21, 57, 76, 195, 222, 319
CviKI_1	RGCY	6 cut(s)	21, 57, 76, 195, 222, 319
DpnI	GATC	2 cut(s)	89, 341
DpnII	GATC	2 cut(s)	87, 339
EaeI	YGGCCR	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	235, 247
EcoRII	CCWGG	3 cut(s)	16, 57, 222
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	2 cut(s)	97, 145
FaeI	CATG	1 cut(s)	349
FaiI	YATR	5 cut(s)	109, 131, 282, 347, 361
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	5, 157
Fsp4HI	GCNGC	2 cut(s)	5, 157
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	2 cut(s)	5, 157
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	57, 222
HapII	CCGG	5 cut(s)	8, 34, 103, 125, 310
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	367, 389
HpaII	CCGG	5 cut(s)	8, 34, 103, 125, 310
HphI	GGTGA	3 cut(s)	6, 157, 259
Hpy188I	TCNGA	2 cut(s)	73, 97
Hpy99I	CGWCG	4 cut(s)	33, 73, 124, 296
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	296, 383
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	28
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	87, 339
LmnI	GCTCC	3 cut(s)	73, 200, 227
MaeII	ACGT	1 cut(s)	28
MalI	GATC	2 cut(s)	89, 341
MboI	GATC	2 cut(s)	87, 339
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	2 cut(s)	333, 397
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	2 cut(s)	376, 398
MmeI	TCCRAC	2 cut(s)	51, 310
MnlI	CCTC	4 cut(s)	47, 109, 161, 226
Mox20I	TGGCCA	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	222
MspI	CCGG	5 cut(s)	8, 34, 103, 125, 310
MspR9I	CCNGG	4 cut(s)	18, 59, 224, 310
MvaI	CCWGG	3 cut(s)	18, 59, 224
MwoI	GCNNNNNNNGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	310
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	87, 339
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	75, 298, 355
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PflFI	GACNNNGTC	2 cut(s)	137, 310
PinAI	ACCGGT	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	6, 158
PleI	GAGTC	2 cut(s)	375, 397
PpsI	GAGTC	2 cut(s)	375, 397
Psp6I	CCWGG	3 cut(s)	16, 57, 222
PspGI	CCWGG	3 cut(s)	16, 57, 222
PspN4I	GGNNCC	3 cut(s)	75, 298, 355
PspPI	GGNCC	2 cut(s)	235, 247
PsuI	RGATCY	1 cut(s)	339
PsyI	GACNNNGTC	2 cut(s)	137, 310
SatI	GCNGC	2 cut(s)	5, 157
Sau3AI	GATC	2 cut(s)	87, 339
Sau96I	GGNCC	2 cut(s)	235, 247
SchI	GAGTC	2 cut(s)	376, 398
ScrFI	CCNGG	4 cut(s)	18, 59, 224, 310
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	2 cut(s)	31, 197
SinI	GGWCC	2 cut(s)	235, 247
Sse9I	AATT	2 cut(s)	333, 397
SsiI	CCGC	7 cut(s)	5, 51, 154, 157, 168, 199, 238
StyD4I	CCNGG	4 cut(s)	16, 57, 222, 308
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	296, 383
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	365, 387
TasI	AATT	2 cut(s)	333, 397
TauI	GCSGC	2 cut(s)	7, 159
Tth111I	GACNNNGTC	2 cut(s)	137, 310
VpaK11BI	GGWCC	2 cut(s)	235, 247
XapI	RAATTY	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.