Rh2BG005300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005931
Physical Location & Seq
Forward (+)
404277 .. 404861
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG005300.1

Sequence Viewer

Length: 477 bp
ATGGTTTGGGTCATGATGCAGAAGACGCAGAACCGGCGGAGGCCAGGAGATTTCATCGGAGCCGGTTTTGGACATCGTCTCCGAGCGCTGGTTATGGACAGAGGCGACGCCGGTTATGGACAGAGGCGACGCCGGTTATGGCAATCGTCTCCGAGCGCCTCCGCTGATGCTTCACCGCCTGCGACACCGTCAACTGCACCGGCTCTAGCTCCGACAATCCCAATGCCGGCGACCGAGCCGAGGACCACAAGAAGGACCACCACCGGAAAATCATCACCAACAACTCTTACGCTGGAGACGACGGTATCTACCCGACCCGGTCAGGGCTTCGCCATGTTAGAATTCAGATCTCCATGGTTGATTCCTATATTCGAGTCCAGTTTGGCAGGGTTGCAGCTTTGGCACAGTTTCGAGCCAGGTTCACGAAGGGATCTTACCAAAAAAAAAACAAAAATCAAACCAGCAATTTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.46

Weight (kDa)

11.64

Isoelectric Point (pI)

78.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 37, 162, 176
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 1 cut(s) 341
AcyI GRCGYC 2 cut(s) 108, 130
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 5 cut(s) 88, 226, 240, 252, 323
AjnI CCWGG 2 cut(s) 43, 415
AluBI AGCT 2 cut(s) 209, 397
AluI AGCT 2 cut(s) 209, 397
Alw26I GTCTC 3 cut(s) 83, 153, 290
AlwI GGATC 1 cut(s) 438
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 2 cut(s) 88, 158
AspS9I GGNCC 2 cut(s) 243, 255
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 165, 267
AvaII GGWCC 2 cut(s) 243, 255
BaeI ACNNNNGTAYC 2 cut(s) 288, 321
BarI GAAGNNNNNNTAC 2 cut(s) 418, 450
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 406
BciT130I CCWGG 2 cut(s) 45, 417
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 3 cut(s) 83, 153, 290
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 2 cut(s) 89, 159
BglII AGATCT 1 cut(s) 347
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
Bme1390I CCNGG 3 cut(s) 45, 318, 417
Bme18I GGWCC 2 cut(s) 243, 255
BmgT120I GGNCC 2 cut(s) 243, 255
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 3 cut(s) 45, 318, 417
BmsI GCATC 2 cut(s) 6, 157
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 318
BsaHI GRCGYC 2 cut(s) 108, 130
BsaJI CCNNGG 2 cut(s) 239, 353
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 226, 240, 252, 323
Bse118I RCCGGY 6 cut(s) 33, 62, 110, 132, 199, 226
Bse1I ACTGG 1 cut(s) 378
BseBI CCWGG 2 cut(s) 45, 417
BseDI CCNNGG 2 cut(s) 239, 353
BseLI CCNNNNNNNGG 5 cut(s) 88, 226, 240, 252, 323
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 406
BsgI GTGCAG 1 cut(s) 180
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 234
BsiSI CCGG 8 cut(s) 34, 63, 111, 133, 200, 227, 264, 318
BslI CCNNNNNNNGG 5 cut(s) 88, 226, 240, 252, 323
BsmAI GTCTC 3 cut(s) 83, 153, 290
BsmBI CGTCTC 3 cut(s) 83, 153, 290
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 347, 430
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 3 cut(s) 37, 162, 176
BspANI GGCC 1 cut(s) 43
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 438
BsrFI RCCGGY 6 cut(s) 33, 62, 110, 132, 199, 226
BsrI ACTGG 1 cut(s) 378
BssAI RCCGGY 6 cut(s) 33, 62, 110, 132, 199, 226
BssECI CCNNGG 2 cut(s) 239, 353
BssMI GATC 2 cut(s) 347, 430
BssNI GRCGYC 2 cut(s) 108, 130
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 2 cut(s) 45, 417
Bst4CI ACNGT 3 cut(s) 189, 304, 407
BstACI GRCGYC 2 cut(s) 108, 130
BstC8I GCNNGC 2 cut(s) 180, 228
BstDSI CCRYGG 1 cut(s) 353
BstH2I RGCGCY 2 cut(s) 89, 159
BstHHI GCGC 2 cut(s) 88, 158
BstKTI GATC 2 cut(s) 350, 433
BstMAI GTCTC 3 cut(s) 83, 153, 290
BstMBI GATC 2 cut(s) 347, 430
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 3 cut(s) 25, 34, 400
BstNI CCWGG 2 cut(s) 45, 417
BstSCI CCNGG 3 cut(s) 43, 316, 415
BstV1I GCAGC 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 2 cut(s) 347, 430
BstYI RGATCY 2 cut(s) 347, 430
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 180, 228
CciI TCATGA 1 cut(s) 12
CfoI GCGC 2 cut(s) 88, 158
Cfr10I RCCGGY 6 cut(s) 33, 62, 110, 132, 199, 226
Cfr13I GGNCC 2 cut(s) 243, 255
CseI GACGC 3 cut(s) 34, 116, 138
CviAII CATG 3 cut(s) 13, 334, 354
CviJI RGCY 8 cut(s) 43, 62, 203, 209, 238, 327, 397, 415
CviKI_1 RGCY 8 cut(s) 43, 62, 203, 209, 238, 327, 397, 415
DpnI GATC 2 cut(s) 349, 432
DpnII GATC 2 cut(s) 347, 430
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 243, 255
Eco47III AGCGCT 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 43, 415
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
Esp3I CGTCTC 3 cut(s) 83, 153, 290
FaeI CATG 3 cut(s) 16, 337, 357
FaiI YATR 7 cut(s) 14, 95, 117, 139, 335, 355, 368
FatI CATG 3 cut(s) 12, 333, 353
Fnu4HI GCNGC 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 1 cut(s) 206
GlaI GCGC 2 cut(s) 87, 157
GluI GCNGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 2 cut(s) 89, 159
HaeIII GGCC 1 cut(s) 43
HapII CCGG 8 cut(s) 34, 63, 111, 133, 200, 227, 264, 318
HgaI GACGC 3 cut(s) 34, 116, 138
HhaI GCGC 2 cut(s) 88, 158
Hin1I GRCGYC 2 cut(s) 108, 130
Hin1II CATG 3 cut(s) 16, 337, 357
Hin6I GCGC 2 cut(s) 86, 156
HinP1I GCGC 2 cut(s) 86, 156
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 2 cut(s) 361, 374
HpaII CCGG 8 cut(s) 34, 63, 111, 133, 200, 227, 264, 318
HphI GGTGA 2 cut(s) 165, 267
Hpy166II GTNNAC 2 cut(s) 192, 422
Hpy188I TCNGA 5 cut(s) 59, 83, 153, 213, 347
Hpy188III TCNNGA 2 cut(s) 13, 423
Hpy8I GTNNAC 2 cut(s) 192, 422
Hpy99I CGWCG 3 cut(s) 110, 132, 304
HpyAV CCTTC 2 cut(s) 246, 420
HpyCH4III ACNGT 3 cut(s) 189, 304, 407
HpyCH4V TGCA 3 cut(s) 19, 197, 394
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 34, 400
Hsp92I GRCGYC 2 cut(s) 108, 130
Hsp92II CATG 3 cut(s) 16, 337, 357
HspAI GCGC 2 cut(s) 86, 156
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Kzo9I GATC 2 cut(s) 347, 430
LmnI GCTCC 2 cut(s) 59, 214
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 2 cut(s) 6, 157
MaeI CTAG 1 cut(s) 206
MalI GATC 2 cut(s) 349, 432
MboI GATC 2 cut(s) 347, 430
MboII GAAGA 1 cut(s) 34
MflI RGATCY 2 cut(s) 347, 430
MluCI AATT 2 cut(s) 341, 465
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 5 cut(s) 33, 95, 117, 169, 234
MroNI GCCGGC 1 cut(s) 226
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 8 cut(s) 34, 63, 111, 133, 200, 227, 264, 318
MspR9I CCNGG 3 cut(s) 45, 318, 417
MvaI CCWGG 2 cut(s) 45, 417
MwoI GCNNNNNNNGC 3 cut(s) 25, 34, 400
NaeI GCCGGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 353
NdeII GATC 2 cut(s) 347, 430
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 3 cut(s) 16, 337, 357
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 264
PagI TCATGA 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PdiI GCCGGC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 361
PflFI GACNNNGTC 3 cut(s) 75, 187, 318
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 43, 415
PspGI CCWGG 2 cut(s) 43, 415
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 243, 255
PsuI RGATCY 2 cut(s) 347, 430
PsyI GACNNNGTC 3 cut(s) 75, 187, 318
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 2 cut(s) 347, 430
Sau96I GGNCC 2 cut(s) 243, 255
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 3 cut(s) 45, 318, 417
SetI ASST 3 cut(s) 211, 399, 421
SfaNI GCATC 2 cut(s) 6, 157
SinI GGWCC 2 cut(s) 243, 255
Sse9I AATT 2 cut(s) 341, 465
SsiI CCGC 3 cut(s) 37, 162, 176
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 3 cut(s) 43, 316, 415
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 3 cut(s) 189, 304, 407
TaqI TCGA 2 cut(s) 372, 411
TaqII GACCGA 1 cut(s) 248
TasI AATT 2 cut(s) 341, 465
TfiI GAWTC 1 cut(s) 361
TseI GCWGC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 43
Tth111I GACNNNGTC 3 cut(s) 75, 187, 318
VpaK11BI GGWCC 2 cut(s) 243, 255
XapI RAATTY 1 cut(s) 341
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.