Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

83792543 .. 83792829

Gene Structure 287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG615700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGACATCATCTACGAGCGCCTCCGCCTCTGCTTCACCGCCTGCGACACCGTCAACTGCACCGACTCCCTCTTTGACAATCTCAACGCCGGCCATGGAGCCCGCAAGAAGGACCACCACCATAAAATCATCACCAGCGACTCTTCTGCTGGAGACGACGGTGCCGACCCGACCCGATCAGGGCTTAGCCTTGTTGGAATTCGGATCTTCTTGTTTGGTTTGGCACAGTTTCGACTGCGACAAAAATGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

85

Amino Acids

9.62

Weight (kDa)

9.02

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AciI	CCGC	3 cut(s)	25, 39, 103
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	109, 180
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	198
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	28, 124
AvaII	GGWCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BcoDI	GTCTC	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	22
BlpI	GCTNAGC	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	100, 163
BpmI	CTGGAG	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 180
Bse118I	RCCGGY	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	109, 180
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	109, 180
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	176, 204
Bsp1720I	GCTNAGC	1 cut(s)	185
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	25, 39, 103
BspANI	GGCC	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	100, 163
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	176, 204
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	3 cut(s)	52, 161, 228
Bst6I	CTCTTC	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	43, 91, 103
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	179, 207
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	176, 204
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	43, 91, 103
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	4 cut(s)	93, 101, 184, 189
CviKI_1	RGCY	4 cut(s)	93, 101, 184, 189
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	178, 206
DpnII	GATC	2 cut(s)	176, 204
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	98
FaiI	YATR	2 cut(s)	96, 123
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	103
GlaI	GCGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	65, 140
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	28, 124
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	3 cut(s)	52, 161, 228
HpyCH4V	TGCA	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	176, 204
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	5 cut(s)	55, 103, 135, 148, 165
MalI	GATC	2 cut(s)	178, 206
MboI	GATC	2 cut(s)	176, 204
MboII	GAAGA	2 cut(s)	135, 199
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	59, 134
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	32, 38, 80
MroNI	GCCGGC	1 cut(s)	89
MspI	CCGG	1 cut(s)	90
NaeI	GCCGGC	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	176, 204
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	100, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	50
PleI	GAGTC	2 cut(s)	59, 134
PpsI	GAGTC	2 cut(s)	59, 134
PspN4I	GGNNCC	2 cut(s)	100, 163
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	176, 204
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	2 cut(s)	59, 134
SduI	GDGCHC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	3 cut(s)	25, 39, 103
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	3 cut(s)	52, 161, 228
TaqI	TCGA	1 cut(s)	232
TasI	AATT	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.