Rh1CG025500

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005931
Physical Location & Seq
Forward (+)
4815860 .. 4816159
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG025500.1

Sequence Viewer

Length: 300 bp
ATGATGTTCCAATTACAACTACGATGTGTGGGGCAAACTTACAGCTATGACCCTTGCTTATCAGTATTTGGATTCTTGTTGTGTATAGTTCATCTGCAAATCCGCTCATGGCAGATTCTGAAAACTAGTGGTGGAAAATTTACACCTCCTAAGGACTTTGTGTGTCCCATAACTAGTACCCTTTTTGATGATCCAGTGACACTTGAGACTGGTCAGACATATGAGCGAAAAGTCATCCAAGAATGGCTCGATAGAGGAAACTATCTGCATTTGCTTCATTTTGGGTTTACAACGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

99

Amino Acids

11.49

Weight (kDa)

6.8

Isoelectric Point (pI)

26.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 50 - 85 1.7e-09 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 1 cut(s) 178
AhlI ACTAGT 2 cut(s) 125, 173
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 118
ApoI RAATTY 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 200
BcuI ACTAGT 2 cut(s) 125, 173
BfaI CTAG 2 cut(s) 126, 174
BpuEI CTTGAG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 194, 214
Bse21I CCTNAGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 194, 214
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 103
BspPI GGATC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 105
BsrI ACTGG 2 cut(s) 194, 214
BssMI GATC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 118
Csp6I GTAC 1 cut(s) 177
CviAII CATG 1 cut(s) 108
CviJI RGCY 2 cut(s) 45, 247
CviKI_1 RGCY 2 cut(s) 45, 247
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco81I CCTNAGG 1 cut(s) 150
FaeI CATG 1 cut(s) 111
FaiI YATR 7 cut(s) 48, 86, 109, 170, 220, 222, 298
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 107
FauNDI CATATG 1 cut(s) 220
FokI GGATG 1 cut(s) 221
FspBI CTAG 2 cut(s) 126, 174
Hin1II CATG 1 cut(s) 111
HinfI GANTC 2 cut(s) 72, 115
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 120, 216
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 97, 268
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 195, 207
MaeI CTAG 2 cut(s) 126, 174
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 105
MboI GATC 1 cut(s) 190
MluCI AATT 2 cut(s) 11, 137
MnlI CCTC 2 cut(s) 156, 248
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 72, 115
PstNI CAGNNNCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 190
SetI ASST 2 cut(s) 47, 148
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SpeI ACTAGT 2 cut(s) 125, 173
Sse9I AATT 2 cut(s) 11, 137
SsiI CCGC 1 cut(s) 103
SspMI CTAG 2 cut(s) 126, 174
TaqI TCGA 1 cut(s) 249
TasI AATT 2 cut(s) 11, 137
TfiI GAWTC 2 cut(s) 72, 115
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 80, 266
TspRI CASTG 1 cut(s) 201
XapI RAATTY 1 cut(s) 137
XspI CTAG 2 cut(s) 126, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.