Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

18144392 .. 18146690

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCAATCGTCTCCGAGCACCTCCGCCGCTGCTTCACAGCCTGCGACACCGTCAACTGCACCGGCTCCATCTCCGACAATCCCGATGCCGACGACCGAGCCAAGGGCAGCAAGAAGGACCACCACCGGAAAATCATCACCAGCAACTCTTACGCTAGAGACGACGGTATCGGCCTGACCTGGTTAGGGCTTCGCCTTGTTGGAATTCAGATCTCCATGGTTGATTCCTATATTCGAGTCCAATTTGGCAGGGTTGCAGCTTTGGCACAGTTTCGAGTCCAGTTGATTGTGTGCTTGATTGGAGCTTTTCTGGTGTCGGATTGTCTAGGTGCAGCAGGTTTCACTCTTCTTCCTCTCCAGTTTCAGCCAGATTGCGACTCTCAATTCGTTCTCAATGGCGTTGCCGTTGTGGAGGCTGGTCTTGGCCTTCTGATGGGCCTTATGTTTGCTACTCTGTTGTTATATCCTTTAGTTTACCTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

162

Amino Acids

17.48

Weight (kDa)

6.25

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
AciI	CCGC	2 cut(s)	25, 28
AcsI	RAATTY	1 cut(s)	204
AfiI	CCNNNNNNNGG	3 cut(s)	103, 186, 433
AjnI	CCWGG	2 cut(s)	179, 477
AluBI	AGCT	2 cut(s)	260, 305
AluI	AGCT	2 cut(s)	260, 305
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	16, 153
AoxI	GGCC	3 cut(s)	172, 424, 436
ApeKI	GCWGC	4 cut(s)	30, 108, 257, 332
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspS9I	GGNCC	2 cut(s)	118, 436
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	118
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	17, 120, 269, 344
BccI	CCATC	2 cut(s)	77, 427
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	2 cut(s)	181, 479
BcoDI	GTCTC	2 cut(s)	16, 153
BfaI	CTAG	2 cut(s)	156, 326
BfuAI	ACCTGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	5 cut(s)	28, 31, 109, 258, 333
BlsI	GCNGC	5 cut(s)	29, 32, 110, 259, 334
Bme1390I	CCNGG	2 cut(s)	181, 479
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	118, 436
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	181, 479
BmsI	GCATC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	102, 216
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 186, 433
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	280, 358
BseBI	CCWGG	2 cut(s)	181, 479
BseDI	CCNNGG	2 cut(s)	102, 216
BseLI	CCNNNNNNNGG	3 cut(s)	103, 186, 433
BseNI	ACTGG	2 cut(s)	280, 358
BseXI	GCAGC	4 cut(s)	17, 120, 269, 344
BsgI	GTGCAG	2 cut(s)	43, 351
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	174, 426, 438
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	63, 127
BslI	CCNNNNNNNGG	3 cut(s)	103, 186, 433
BsmAI	GTCTC	2 cut(s)	16, 153
BsmBI	CGTCTC	2 cut(s)	16, 153
BsnI	GGCC	3 cut(s)	174, 426, 438
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	2 cut(s)	25, 28
BspANI	GGCC	3 cut(s)	174, 426, 438
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	280, 358
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	102, 216
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	102, 216
Bst2UI	CCWGG	2 cut(s)	181, 479
Bst4CI	ACNGT	3 cut(s)	52, 167, 270
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	216
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	2 cut(s)	16, 153
BstMBI	GATC	1 cut(s)	210
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	181, 479
BstSCI	CCNGG	2 cut(s)	179, 477
BstV1I	GCAGC	4 cut(s)	17, 120, 269, 344
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	174, 426, 438
BtgI	CCRYGG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	118, 436
CsiI	ACCWGGT	2 cut(s)	179, 477
CviAII	CATG	1 cut(s)	217
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	102, 216
Eco47I	GGWCC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	179, 477
EcoT14I	CCWWGG	2 cut(s)	102, 216
ErhI	CCWWGG	2 cut(s)	102, 216
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	1 cut(s)	220
FaiI	YATR	4 cut(s)	218, 231, 443, 463
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	5 cut(s)	28, 31, 109, 258, 333
Fsp4HI	GCNGC	5 cut(s)	28, 31, 109, 258, 333
FspBI	CTAG	2 cut(s)	156, 326
GluI	GCNGC	5 cut(s)	28, 31, 109, 258, 333
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	174, 426, 438
HapII	CCGG	2 cut(s)	63, 127
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	224, 237, 276, 377
HpaII	CCGG	2 cut(s)	63, 127
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	55, 475
Hpy188I	TCNGA	5 cut(s)	16, 76, 210, 319, 432
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	55, 475
Hpy99I	CGWCG	2 cut(s)	95, 167
HpyAV	CCTTC	2 cut(s)	109, 437
HpyCH4III	ACNGT	3 cut(s)	52, 167, 270
HpyCH4V	TGCA	3 cut(s)	60, 257, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	2 cut(s)	71, 302
Lsp1109I	GCAGC	4 cut(s)	17, 120, 269, 344
LweI	GCATC	1 cut(s)	76
MabI	ACCWGGT	2 cut(s)	179, 477
MaeI	CTAG	2 cut(s)	156, 326
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	338, 341
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	204, 242, 383
MlyI	GAGTC	3 cut(s)	246, 285, 371
MmeI	TCCRAC	3 cut(s)	99, 181, 297
MnlI	CCTC	3 cut(s)	32, 363, 406
MseI	TTAA	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	2 cut(s)	63, 127
MspR9I	CCNGG	2 cut(s)	181, 479
MvaI	CCWGG	2 cut(s)	181, 479
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	224
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	29, 32, 110, 259, 334
PleI	GAGTC	3 cut(s)	245, 284, 371
PpsI	GAGTC	3 cut(s)	245, 284, 371
Psp6I	CCWGG	2 cut(s)	179, 477
PspGI	CCWGG	2 cut(s)	179, 477
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	118, 436
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	484
SatI	GCNGC	5 cut(s)	28, 31, 109, 258, 333
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	118, 436
SchI	GAGTC	3 cut(s)	246, 285, 371
ScrFI	CCNGG	2 cut(s)	181, 479
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	7 cut(s)	24, 182, 262, 307, 331, 340, 480
SexAI	ACCWGGT	2 cut(s)	179, 477
SfaNI	GCATC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	3 cut(s)	204, 242, 383
SsiI	CCGC	2 cut(s)	25, 28
SspMI	CTAG	2 cut(s)	156, 326
StyD4I	CCNGG	2 cut(s)	179, 477
StyI	CCWWGG	2 cut(s)	102, 216
TaaI	ACNGT	3 cut(s)	52, 167, 270
TaqI	TCGA	2 cut(s)	235, 274
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	3 cut(s)	204, 242, 383
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	484
Tru9I	TTAA	1 cut(s)	484
TseI	GCWGC	4 cut(s)	30, 108, 257, 332
Tth111I	GACNNNGTC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	204
XspI	CTAG	2 cut(s)	156, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.