Rh2CG004100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005931
Physical Location & Seq
Forward (+)
395514 .. 395897
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG004100.1

Sequence Viewer

Length: 384 bp
ATGGTTTGGGTCGTCGCAAAGGCCAGGAGATTTCGTCGGAGCCAGTTTTGGAGATCGTCTCCGAGCACCGGTTATGGACAGAGGCGACGCCGGTTATGGACATCGTCTCCAAGCACCTCCGTCGCTACTTCACCGCCTGCGACACCGTCAACTGCACCGGCTCCTGCTCTGACAATCTCAATGTCGGTCAGGGAGCCGAGGACCACAAGAAGGACCACCACCACAAAATCATCACCAGCAACTCTTATGTTGGATACGACGGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTCAGATCTCTATGGTTGGTTCCTTATATTCGAGTCCAATTTGGCGAGGTTTGGCACAGTTTCGAGTCTTGCAATTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.37

Weight (kDa)

11.9

Isoelectric Point (pI)

94.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AciI CCGC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 88
AfiI CCNNNNNNNGG 3 cut(s) 68, 210, 281
AgeI ACCGGT 1 cut(s) 68
AjnI CCWGG 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 63, 111
AoxI GGCC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 299
AsiGI ACCGGT 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 201, 213
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 123, 225
AvaII GGWCC 2 cut(s) 201, 213
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BanI GGYRCC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 1 cut(s) 247
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 63, 111
BfuI GTATCC 1 cut(s) 247
BglII AGATCT 1 cut(s) 305
Bme1390I CCNGG 2 cut(s) 25, 276
Bme18I GGWCC 2 cut(s) 201, 213
BmgT120I GGNCC 2 cut(s) 201, 213
BmiI GGNNCC 5 cut(s) 41, 162, 195, 264, 321
BmrFI CCNGG 2 cut(s) 25, 276
BplI GAGNNNNNCTC 2 cut(s) 43, 75
BpuMI CCSGG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 68
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 210, 281
Bse118I RCCGGY 3 cut(s) 68, 90, 157
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 3 cut(s) 68, 210, 281
BseNI ACTGG 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 262
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 4 cut(s) 69, 91, 158, 276
BslI CCNNNNNNNGG 3 cut(s) 68, 210, 281
BsmAI GTCTC 2 cut(s) 63, 111
BsmBI CGTCTC 2 cut(s) 63, 111
BsnI GGCC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 53, 305
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 23
BspLI GGNNCC 5 cut(s) 41, 162, 195, 264, 321
BspT107I GGYRCC 1 cut(s) 262
BsrFI RCCGGY 3 cut(s) 68, 90, 157
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 3 cut(s) 68, 90, 157
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 2 cut(s) 53, 305
BssNI GRCGYC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 3 cut(s) 147, 262, 359
BstACI GRCGYC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 138
BstKTI GATC 2 cut(s) 56, 308
BstMAI GTCTC 2 cut(s) 63, 111
BstMBI GATC 2 cut(s) 53, 305
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 23, 274
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 138
Cfr10I RCCGGY 3 cut(s) 68, 90, 157
Cfr13I GGNCC 2 cut(s) 201, 213
CseI GACGC 1 cut(s) 96
CspAI ACCGGT 1 cut(s) 68
CviJI RGCY 5 cut(s) 23, 42, 161, 196, 285
CviKI_1 RGCY 5 cut(s) 23, 42, 161, 196, 285
DpnI GATC 2 cut(s) 55, 307
DpnII GATC 2 cut(s) 53, 305
Eco47I GGWCC 2 cut(s) 201, 213
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 23
Esp3I CGTCTC 2 cut(s) 63, 111
FaiI YATR 5 cut(s) 75, 97, 248, 313, 327
HaeIII GGCC 1 cut(s) 23
HapII CCGG 4 cut(s) 69, 91, 158, 276
HgaI GACGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 2 cut(s) 333, 365
HpaII CCGG 4 cut(s) 69, 91, 158, 276
HphI GGTGA 2 cut(s) 123, 225
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 4 cut(s) 39, 63, 171, 305
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 5 cut(s) 17, 39, 90, 125, 262
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 3 cut(s) 147, 262, 359
HpyCH4V TGCA 2 cut(s) 155, 372
Hsp92I GRCGYC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 53, 305
LmnI GCTCC 3 cut(s) 39, 166, 193
MalI GATC 2 cut(s) 55, 307
MboI GATC 2 cut(s) 53, 305
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 3 cut(s) 299, 338, 373
MlyI GAGTC 2 cut(s) 342, 374
MmeI TCCRAC 3 cut(s) 17, 231, 276
MnlI CCTC 4 cut(s) 75, 127, 192, 340
MspI CCGG 4 cut(s) 69, 91, 158, 276
MspR9I CCNGG 2 cut(s) 25, 276
MvaI CCWGG 1 cut(s) 25
NciI CCSGG 1 cut(s) 276
NdeII GATC 2 cut(s) 53, 305
NlaIV GGNNCC 5 cut(s) 41, 162, 195, 264, 321
NmeAIII GCCGAG 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PflFI GACNNNGTC 3 cut(s) 103, 145, 276
PinAI ACCGGT 1 cut(s) 68
PleI GAGTC 2 cut(s) 341, 373
PpsI GAGTC 2 cut(s) 341, 373
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 5 cut(s) 41, 162, 195, 264, 321
PspPI GGNCC 2 cut(s) 201, 213
PsuI RGATCY 1 cut(s) 305
PsyI GACNNNGTC 3 cut(s) 103, 145, 276
Sau3AI GATC 2 cut(s) 53, 305
Sau96I GGNCC 2 cut(s) 201, 213
SchI GAGTC 2 cut(s) 342, 374
ScrFI CCNGG 2 cut(s) 25, 276
SduI GDGCHC 1 cut(s) 68
SetI ASST 2 cut(s) 119, 351
SinI GGWCC 2 cut(s) 201, 213
Sse9I AATT 3 cut(s) 299, 338, 373
SsiI CCGC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 23, 274
TaaI ACNGT 3 cut(s) 147, 262, 359
TaqI TCGA 2 cut(s) 331, 363
TaqII GACCGA 1 cut(s) 175
TasI AATT 3 cut(s) 299, 338, 373
TspGWI ACGGA 1 cut(s) 109
Tth111I GACNNNGTC 3 cut(s) 103, 145, 276
VpaK11BI GGWCC 2 cut(s) 201, 213
XapI RAATTY 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.