Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

59350602 .. 59352698

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCGACGATAGAAGGGGCAAGCTTCATCAAAACCAACTCCAAAAGAACCCATGGAAGCTCTAGCCACCTGCTTTTTGTGCACATCGGTCTAATATTGGATTCACAACATTCTTCAACTCAAATGCTCGCCACGTCGCCGGAATGGTTTGGGTCGTTGCGGAGGCCAGGAGATTTCGCGGAGCCAATTTTGGAGATCGTCTCCGAGCACTGGTTATGGACAGAGGTGACGCCGGTTATGGACATCGTCTCCAAGCACCTCCGCCACTGCTTCACCGCCTACGACACAGTCAACTGCACCGGCTCCCGCTCTGACAATCTCAATGCCGGCCAGGGAGCCGAGGACCGCAAGAAGGACCACCACCGCAAAATCATCACTAGCAACTCTTATGCTGGGTACGACAGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTCGGATCTCCATGGTTGATTCCTTATATTCGAGTCCAGTTTGGCGAGGTTTGGCACAGTTTCGAGTCCTGCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

174

Amino Acids

19.38

Weight (kDa)

7.9

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	78
AccBSI	CCGCTC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	179
AciI	CCGC	7 cut(s)	160, 179, 262, 276, 307, 346, 364
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	3 cut(s)	210, 352, 423
AgsI	TTSAA	1 cut(s)	117
AjiI	CACGTC	1 cut(s)	135
AjnI	CCWGG	2 cut(s)	166, 330
AluBI	AGCT	2 cut(s)	24, 60
AluI	AGCT	2 cut(s)	24, 60
Alw21I	GWGCWC	2 cut(s)	84, 210
Alw26I	GTCTC	2 cut(s)	205, 253
Alw44I	GTGCAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	2 cut(s)	164, 328
ApaLI	GTGCAC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	343, 355
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	2 cut(s)	238, 265
AvaII	GGWCC	2 cut(s)	343, 355
BaeGI	GKGCMC	1 cut(s)	84
BaeI	ACNNNNGTAYC	2 cut(s)	388, 421
Bbv12I	GWGCWC	2 cut(s)	84, 210
BciT130I	CCWGG	2 cut(s)	168, 332
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	205, 253
BfaI	CTAG	2 cut(s)	63, 378
BfuAI	ACCTGC	1 cut(s)	78
Bme1390I	CCNGG	3 cut(s)	168, 332, 418
Bme18I	GGWCC	2 cut(s)	343, 355
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	343, 355
BmiI	GGNNCC	3 cut(s)	183, 304, 337
BmrFI	CCNGG	3 cut(s)	168, 332, 418
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpuMI	CCSGG	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	52, 331, 339, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 352, 423
Bse118I	RCCGGY	3 cut(s)	232, 299, 326
Bse1I	ACTGG	2 cut(s)	215, 479
BseBI	CCWGG	2 cut(s)	168, 332
BseDI	CCNNGG	4 cut(s)	52, 331, 339, 453
BseLI	CCNNNNNNNGG	3 cut(s)	210, 352, 423
BseNI	ACTGG	2 cut(s)	215, 479
BseSI	GKGCMC	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	166, 330
BsiHKAI	GWGCWC	2 cut(s)	84, 210
BsiSI	CCGG	5 cut(s)	140, 233, 300, 327, 418
BslI	CCNNNNNNNGG	3 cut(s)	210, 352, 423
BsmAI	GTCTC	2 cut(s)	205, 253
BsmBI	CGTCTC	2 cut(s)	205, 253
BsnI	GGCC	2 cut(s)	166, 330
Bsp1286I	GDGCHC	2 cut(s)	84, 210
Bsp143I	GATC	2 cut(s)	195, 447
Bsp19I	CCATGG	2 cut(s)	52, 453
BspACI	CCGC	7 cut(s)	160, 179, 262, 276, 307, 346, 364
BspANI	GGCC	2 cut(s)	166, 330
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	183, 304, 337
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	309
BsrFI	RCCGGY	3 cut(s)	232, 299, 326
BsrI	ACTGG	2 cut(s)	215, 479
BssAI	RCCGGY	3 cut(s)	232, 299, 326
BssECI	CCNNGG	4 cut(s)	52, 331, 339, 453
BssMI	GATC	2 cut(s)	195, 447
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	52, 453
Bst2UI	CCWGG	2 cut(s)	168, 332
Bst4CI	ACNGT	3 cut(s)	289, 404, 501
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	22, 129, 328
BstDSI	CCRYGG	2 cut(s)	52, 453
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	198, 450
BstMAI	GTCTC	2 cut(s)	205, 253
BstMBI	GATC	2 cut(s)	195, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	168, 332
BstSCI	CCNGG	3 cut(s)	166, 330, 416
BstSLI	GKGCMC	1 cut(s)	84
BstUI	CGCG	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	166, 330
BtgI	CCRYGG	2 cut(s)	52, 453
BtrI	CACGTC	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	3 cut(s)	208, 265, 409
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	22, 129, 328
Cfr10I	RCCGGY	3 cut(s)	232, 299, 326
Cfr13I	GGNCC	2 cut(s)	343, 355
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	2 cut(s)	53, 454
CviJI	RGCY	9 cut(s)	24, 60, 66, 166, 184, 303, 330, 338, 427
CviKI_1	RGCY	9 cut(s)	24, 60, 66, 166, 184, 303, 330, 338, 427
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	2 cut(s)	197, 449
DpnII	GATC	2 cut(s)	195, 447
EaeI	YGGCCR	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	52, 453
Eco47I	GGWCC	2 cut(s)	343, 355
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	166, 330
EcoT14I	CCWWGG	2 cut(s)	52, 453
ErhI	CCWWGG	2 cut(s)	52, 453
Esp3I	CGTCTC	2 cut(s)	205, 253
FaeI	CATG	2 cut(s)	56, 457
FaiI	YATR	6 cut(s)	54, 217, 239, 390, 455, 469
FatI	CATG	2 cut(s)	52, 453
FauI	CCCGC	1 cut(s)	314
FblI	GTMKAC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	63, 378
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	166, 330
HapII	CCGG	5 cut(s)	140, 233, 300, 327, 418
HgaI	GACGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	56, 457
HincII	GTYRAC	2 cut(s)	6, 292
HindII	GTYRAC	2 cut(s)	6, 292
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	4 cut(s)	101, 461, 475, 507
HpaII	CCGG	5 cut(s)	140, 233, 300, 327, 418
HphI	GGTGA	2 cut(s)	238, 265
Hpy166II	GTNNAC	3 cut(s)	6, 82, 292
Hpy188I	TCNGA	3 cut(s)	205, 313, 447
Hpy8I	GTNNAC	3 cut(s)	6, 82, 292
Hpy99I	CGWCG	2 cut(s)	10, 139
HpyAV	CCTTC	2 cut(s)	8, 346
HpyCH4III	ACNGT	3 cut(s)	289, 404, 501
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	82, 297, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	56, 457
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	195, 447
LmnI	GCTCC	3 cut(s)	181, 308, 335
MaeI	CTAG	2 cut(s)	63, 378
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	197, 449
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	2 cut(s)	195, 447
MboII	GAAGA	1 cut(s)	105
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	84, 210
MluCI	AATT	3 cut(s)	186, 441, 515
MlyI	GAGTC	2 cut(s)	484, 516
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	5 cut(s)	156, 217, 269, 334, 482
MroNI	GCCGGC	1 cut(s)	326
MspI	CCGG	5 cut(s)	140, 233, 300, 327, 418
MspR9I	CCNGG	3 cut(s)	168, 332, 418
MvaI	CCWGG	2 cut(s)	168, 332
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	79
NaeI	GCCGGC	1 cut(s)	328
NciI	CCSGG	1 cut(s)	418
NcoI	CCATGG	2 cut(s)	52, 453
NdeII	GATC	2 cut(s)	195, 447
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	56, 457
NlaIV	GGNNCC	3 cut(s)	183, 304, 337
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	101, 461
PflFI	GACNNNGTC	3 cut(s)	245, 287, 418
PleI	GAGTC	2 cut(s)	483, 515
PpsI	GAGTC	2 cut(s)	483, 515
Psp6I	CCWGG	2 cut(s)	166, 330
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	166, 330
PspN4I	GGNNCC	3 cut(s)	183, 304, 337
PspPI	GGNCC	2 cut(s)	343, 355
PsuI	RGATCY	1 cut(s)	447
PsyI	GACNNNGTC	3 cut(s)	245, 287, 418
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SalI	GTCGAC	1 cut(s)	4
Sau3AI	GATC	2 cut(s)	195, 447
Sau96I	GGNCC	2 cut(s)	343, 355
SchI	GAGTC	2 cut(s)	484, 516
ScrFI	CCNGG	3 cut(s)	168, 332, 418
SduI	GDGCHC	2 cut(s)	84, 210
SetI	ASST	7 cut(s)	26, 62, 72, 137, 228, 261, 493
SinI	GGWCC	2 cut(s)	343, 355
Sse9I	AATT	3 cut(s)	186, 441, 515
SsiI	CCGC	7 cut(s)	160, 179, 262, 276, 307, 346, 364
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	2 cut(s)	63, 378
StyD4I	CCNGG	3 cut(s)	166, 330, 416
StyI	CCWWGG	2 cut(s)	52, 453
TaaI	ACNGT	3 cut(s)	289, 404, 501
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	3 cut(s)	5, 473, 505
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	186, 441, 515
TfiI	GAWTC	2 cut(s)	101, 461
TscAI	CASTG	3 cut(s)	215, 272, 409
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	3 cut(s)	215, 272, 409
Tth111I	GACNNNGTC	3 cut(s)	245, 287, 418
VneI	GTGCAC	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	343, 355
XapI	RAATTY	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	63, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.