Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Forward (+)

37440892 .. 37442524

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG196300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGACATCATCTCCAAGCGCCTTCGCCGCTACTTCACCGCCTGCGACACCGTCAACTGCACCGGCTCCCGCTCCGACAATCTCAATGCCGACCAGGGAGCCGAGGACCACAAGAAGGACCACCACCGCAAAATCACCACCAGCAACTCTTATGCTGGATACGACGGTGCCGACCCAACCCGGTCAGGGCTTCGCCTTGTTGGAATTCGGATCTCCATGTTGGCAGAAGGGCAACACTATACATCTCTCACTGTCTGTCCAGGCAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

90

Amino Acids

9.96

Weight (kDa)

8.91

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	4 cut(s)	28, 39, 70, 127
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	115, 186
AjnI	CCWGG	2 cut(s)	93, 259
AlwI	GGATC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	106, 118
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	28, 127
AvaII	GGWCC	2 cut(s)	106, 118
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
BanI	GGYRCC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	95, 261
BciVI	GTATCC	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	95, 181, 261
Bme18I	GGWCC	2 cut(s)	106, 118
BmgT120I	GGNCC	2 cut(s)	106, 118
BmiI	GGNNCC	3 cut(s)	67, 100, 169
BmrFI	CCNGG	3 cut(s)	95, 181, 261
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	94, 102
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 186
Bse118I	RCCGGY	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	95, 261
BseDI	CCNNGG	2 cut(s)	94, 102
BseLI	CCNNNNNNNGG	2 cut(s)	115, 186
BsgI	GTGCAG	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	63, 181
BslI	CCNNNNNNNGG	2 cut(s)	115, 186
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	4 cut(s)	28, 39, 70, 127
BspLI	GGNNCC	3 cut(s)	67, 100, 169
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	94, 102
BssMI	GATC	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	95, 261
Bst4CI	ACNGT	3 cut(s)	52, 167, 253
BstC8I	GCNNGC	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	2 cut(s)	95, 261
BstSCI	CCNGG	3 cut(s)	93, 179, 259
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	106, 118
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	3 cut(s)	66, 101, 190
CviKI_1	RGCY	3 cut(s)	66, 101, 190
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	106, 118
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	93, 259
FaeI	CATG	1 cut(s)	220
FaiI	YATR	3 cut(s)	153, 218, 240
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	28
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	22
HapII	CCGG	2 cut(s)	63, 181
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HpaII	CCGG	2 cut(s)	63, 181
HphI	GGTGA	2 cut(s)	28, 127
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	76, 210
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	32, 109, 221
HpyCH4III	ACNGT	3 cut(s)	52, 167, 253
HpyCH4V	TGCA	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	3 cut(s)	71, 77, 98
LpnPI	CCDG	9 cut(s)	55, 76, 80, 107, 141, 154, 171, 194, 246
MalI	GATC	1 cut(s)	212
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	1 cut(s)	210
MflI	RGATCY	1 cut(s)	210
MluCI	AATT	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	99, 181
MnlI	CCTC	1 cut(s)	97
MspI	CCGG	2 cut(s)	63, 181
MspR9I	CCNGG	3 cut(s)	95, 181, 261
MvaI	CCWGG	2 cut(s)	95, 261
MwoI	GCNNNNNNNGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	67, 100, 169
NmeAIII	GCCGAG	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	93, 259
PspGI	CCWGG	2 cut(s)	93, 259
PspN4I	GGNNCC	3 cut(s)	67, 100, 169
PspPI	GGNCC	2 cut(s)	106, 118
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	50
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	106, 118
ScrFI	CCNGG	3 cut(s)	95, 181, 261
SinI	GGWCC	2 cut(s)	106, 118
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	4 cut(s)	28, 39, 70, 127
StyD4I	CCNGG	3 cut(s)	93, 179, 259
TaaI	ACNGT	3 cut(s)	52, 167, 253
TasI	AATT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	256
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	106, 118
XapI	RAATTY	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.