Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Reverse (-)

28741127 .. 28752262

Gene Structure 11136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG180000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAAGATGCCATACACCGCACACGTGGCGAAATCAAAGCGCCGGTCTCACCAGGCTCGCCACTTCGCCGGAATGCTTTGGATCGTCGCGGAGGCCAGGAGATTTCGTCAGAGCCAGTTTTGGAGATCGTCTCCGAGCACCGGTTATGGACAGAGGCGACGCCAGTTATGGACATCGTCTCCAAGCGCCTTCGCCGCTGCTTCACCGCCTGCGACACCGTCAACTGCACCGACTCCCGCTCCGACAATCTCAATGCCGGCCAGGGAGCCGAGGACCGCAAGAAGGACCACCACCGCAAAATCATCACCAGCAACTCTTATGCTGGATACGACGGTGCCGACTCGACCCGGTTAGGGCTTCGCCTTGTTGGAATTTTGATCTCCACGTGGAATTCTCCCTATAAAGGCACTGACAAGGAGGCTGCTGACATCACCGCTGCTGGCCGGGACAAGGGACTTGGTACATCAACTGCTTTTGGGTGGAGTCTGGCTCCGAAATCGTTGACAGATCAGGGGTTTTGGGACAGGCTATATTGGGAATATCCTCCTGAGATGGATGTCGTAGGTCCTGGTGAGATGGATCTTGCCGGCAACTGTGGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

201

Amino Acids

22.07

Weight (kDa)

6.43

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	240
AccII	CGCG	1 cut(s)	90
AciI	CCGC	8 cut(s)	19, 90, 196, 207, 238, 277, 295, 435
AclWI	GGATC	2 cut(s)	90, 588
AcoI	YGGCCR	2 cut(s)	259, 442
AcsI	RAATTY	2 cut(s)	372, 391
AcvI	CACGTG	2 cut(s)	26, 387
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	5 cut(s)	141, 283, 354, 404, 451
AflIII	ACRYGT	1 cut(s)	23
AgeI	ACCGGT	1 cut(s)	141
AjnI	CCWGG	4 cut(s)	52, 96, 261, 568
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	3 cut(s)	52, 136, 184
AlwI	GGATC	2 cut(s)	90, 588
AoxI	GGCC	3 cut(s)	94, 259, 442
ApeKI	GCWGC	3 cut(s)	198, 422, 437
ApoI	RAATTY	2 cut(s)	372, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AsiGI	ACCGGT	1 cut(s)	141
AspLEI	GCGC	2 cut(s)	43, 189
AspS9I	GGNCC	3 cut(s)	274, 286, 566
AsuC2I	CCSGG	2 cut(s)	349, 446
AsuHPI	GGTGA	5 cut(s)	42, 196, 298, 424, 584
AvaII	GGWCC	3 cut(s)	274, 286, 566
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	1 cut(s)	335
BbrPI	CACGTG	2 cut(s)	26, 387
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	185, 409, 424
BccI	CCATC	2 cut(s)	547, 571
BciT130I	CCWGG	4 cut(s)	54, 98, 263, 570
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	2 cut(s)	349, 446
BcoDI	GTCTC	3 cut(s)	52, 136, 184
BfoI	RGCGCY	2 cut(s)	44, 190
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	4 cut(s)	196, 199, 423, 438
BlsI	GCNGC	4 cut(s)	197, 200, 424, 439
Bme1390I	CCNGG	6 cut(s)	54, 98, 263, 349, 446, 570
Bme18I	GGWCC	3 cut(s)	274, 286, 566
BmgT120I	GGNCC	3 cut(s)	274, 286, 566
BmiI	GGNNCC	3 cut(s)	268, 337, 492
BmrFI	CCNGG	6 cut(s)	54, 98, 263, 349, 446, 570
BplI	GAGNNNNNCTC	4 cut(s)	116, 148, 475, 507
BpuMI	CCSGG	2 cut(s)	349, 446
BsaAI	YACGTR	2 cut(s)	26, 387
BsaHI	GRCGYC	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	262, 270
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 164, 194, 224, 254
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 283, 354, 404, 451
Bse118I	RCCGGY	4 cut(s)	43, 141, 257, 587
Bse1I	ACTGG	2 cut(s)	116, 164
BseBI	CCWGG	4 cut(s)	54, 98, 263, 570
BseDI	CCNNGG	2 cut(s)	262, 270
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	5 cut(s)	141, 283, 354, 404, 451
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	2 cut(s)	116, 164
BseXI	GCAGC	3 cut(s)	185, 409, 424
BsgI	GTGCAG	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	96, 261, 444
BshNI	GGYRCC	1 cut(s)	335
BshTI	ACCGGT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	7 cut(s)	44, 70, 142, 258, 349, 445, 588
BslFI	GGGAC	3 cut(s)	461, 468, 536
BslI	CCNNNNNNNGG	5 cut(s)	141, 283, 354, 404, 451
BsmAI	GTCTC	3 cut(s)	52, 136, 184
BsmBI	CGTCTC	2 cut(s)	136, 184
BsmFI	GGGAC	3 cut(s)	461, 468, 536
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	96, 261, 444
Bso31I	GGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	82, 126, 378, 508, 580
BspACI	CCGC	8 cut(s)	19, 90, 196, 207, 238, 277, 295, 435
BspANI	GGCC	3 cut(s)	96, 261, 444
BspCNI	CTCAG	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	268, 337, 492
BspPI	GGATC	2 cut(s)	90, 588
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	52
BsrBI	CCGCTC	1 cut(s)	240
BsrFI	RCCGGY	4 cut(s)	43, 141, 257, 587
BsrI	ACTGG	2 cut(s)	116, 164
BssAI	RCCGGY	4 cut(s)	43, 141, 257, 587
BssECI	CCNNGG	2 cut(s)	262, 270
BssMI	GATC	5 cut(s)	82, 126, 378, 508, 580
BssNI	GRCGYC	1 cut(s)	161
Bst2UI	CCWGG	4 cut(s)	54, 98, 263, 570
Bst4CI	ACNGT	3 cut(s)	220, 335, 596
BstACI	GRCGYC	1 cut(s)	161
BstBAI	YACGTR	2 cut(s)	26, 387
BstC8I	GCNNGC	5 cut(s)	59, 211, 259, 442, 589
BstDEI	CTNAG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	2 cut(s)	44, 190
BstHHI	GCGC	2 cut(s)	43, 189
BstKTI	GATC	5 cut(s)	85, 129, 381, 511, 583
BstMAI	GTCTC	3 cut(s)	52, 136, 184
BstMBI	GATC	5 cut(s)	82, 126, 378, 508, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 195
BstNI	CCWGG	4 cut(s)	54, 98, 263, 570
BstSCI	CCNGG	6 cut(s)	52, 96, 261, 347, 444, 568
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	3 cut(s)	185, 409, 424
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	3 cut(s)	96, 261, 444
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	5 cut(s)	59, 211, 259, 442, 589
CfoI	GCGC	2 cut(s)	43, 189
Cfr10I	RCCGGY	4 cut(s)	43, 141, 257, 587
Cfr13I	GGNCC	3 cut(s)	274, 286, 566
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	462
CspAI	ACCGGT	1 cut(s)	141
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	5 cut(s)	84, 128, 380, 510, 582
DpnII	GATC	5 cut(s)	82, 126, 378, 508, 580
EaeI	YGGCCR	2 cut(s)	259, 442
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	274, 286, 566
Eco72I	CACGTG	2 cut(s)	26, 387
EcoO109I	RGGNCCY	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	4 cut(s)	52, 96, 261, 568
Esp3I	CGTCTC	2 cut(s)	136, 184
FaiI	YATR	6 cut(s)	14, 148, 170, 321, 402, 532
FaqI	GGGAC	3 cut(s)	461, 468, 536
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	4 cut(s)	196, 199, 423, 438
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	4 cut(s)	196, 199, 423, 438
GlaI	GCGC	2 cut(s)	42, 188
GluI	GCNGC	4 cut(s)	196, 199, 423, 438
HaeII	RGCGCY	2 cut(s)	44, 190
HaeIII	GGCC	3 cut(s)	96, 261, 444
HapII	CCGG	7 cut(s)	44, 70, 142, 258, 349, 445, 588
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	43, 189
Hin1I	GRCGYC	1 cut(s)	161
Hin6I	GCGC	2 cut(s)	41, 187
HinP1I	GCGC	2 cut(s)	41, 187
HincII	GTYRAC	2 cut(s)	223, 504
HindII	GTYRAC	2 cut(s)	223, 504
HinfI	GANTC	3 cut(s)	233, 341, 484
HpaII	CCGG	7 cut(s)	44, 70, 142, 258, 349, 445, 588
HphI	GGTGA	5 cut(s)	42, 196, 298, 424, 584
Hpy166II	GTNNAC	2 cut(s)	223, 504
Hpy188I	TCNGA	4 cut(s)	112, 136, 244, 495
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	2 cut(s)	223, 504
Hpy99I	CGWCG	3 cut(s)	90, 163, 335
HpyAV	CCTTC	2 cut(s)	200, 277
HpyCH4III	ACNGT	3 cut(s)	220, 335, 596
HpyCH4IV	ACGT	2 cut(s)	25, 386
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 195
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	2 cut(s)	25, 386
Hsp92I	GRCGYC	1 cut(s)	161
HspAI	GCGC	2 cut(s)	41, 187
KroI	GCCGGC	2 cut(s)	257, 587
KroNI	GCCGGC	2 cut(s)	259, 589
Kzo9I	GATC	5 cut(s)	82, 126, 378, 508, 580
LmnI	GCTCC	3 cut(s)	245, 266, 496
Lsp1109I	GCAGC	3 cut(s)	185, 409, 424
MaeII	ACGT	2 cut(s)	25, 386
MalI	GATC	5 cut(s)	84, 128, 380, 510, 582
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	5 cut(s)	82, 126, 378, 508, 580
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	372, 391
MlyI	GAGTC	3 cut(s)	227, 335, 493
MmeI	TCCRAC	2 cut(s)	267, 349
MnlI	CCTC	5 cut(s)	86, 148, 265, 412, 555
MroNI	GCCGGC	2 cut(s)	257, 587
MspA1I	CMGCKG	2 cut(s)	198, 437
MspI	CCGG	7 cut(s)	44, 70, 142, 258, 349, 445, 588
MspR9I	CCNGG	6 cut(s)	54, 98, 263, 349, 446, 570
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	4 cut(s)	54, 98, 263, 570
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	27, 195
NaeI	GCCGGC	2 cut(s)	259, 589
NciI	CCSGG	2 cut(s)	349, 446
NdeII	GATC	5 cut(s)	82, 126, 378, 508, 580
NgoMIV	GCCGGC	2 cut(s)	257, 587
NlaIV	GGNNCC	3 cut(s)	268, 337, 492
NmeAIII	GCCGAG	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	1 cut(s)	79
PdiI	GCCGGC	2 cut(s)	259, 589
PflFI	GACNNNGTC	2 cut(s)	176, 218
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	197, 200, 424, 439
PleI	GAGTC	3 cut(s)	227, 335, 492
PmaCI	CACGTG	2 cut(s)	26, 387
PmlI	CACGTG	2 cut(s)	26, 387
PpsI	GAGTC	3 cut(s)	227, 335, 492
Ppu21I	YACGTR	2 cut(s)	26, 387
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	4 cut(s)	52, 96, 261, 568
PspCI	CACGTG	2 cut(s)	26, 387
PspGI	CCWGG	4 cut(s)	52, 96, 261, 568
PspN4I	GGNNCC	3 cut(s)	268, 337, 492
PspPI	GGNCC	3 cut(s)	274, 286, 566
PspPPI	RGGWCCY	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	580
PsyI	GACNNNGTC	2 cut(s)	176, 218
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SatI	GCNGC	4 cut(s)	196, 199, 423, 438
Sau3AI	GATC	5 cut(s)	82, 126, 378, 508, 580
Sau96I	GGNCC	3 cut(s)	274, 286, 566
SchI	GAGTC	3 cut(s)	227, 335, 493
ScrFI	CCNGG	6 cut(s)	54, 98, 263, 349, 446, 570
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	3 cut(s)	28, 389, 568
SinI	GGWCC	3 cut(s)	274, 286, 566
Sse9I	AATT	2 cut(s)	372, 391
SsiI	CCGC	8 cut(s)	19, 90, 196, 207, 238, 277, 295, 435
StyD4I	CCNGG	6 cut(s)	52, 96, 261, 347, 444, 568
TaaI	ACNGT	3 cut(s)	220, 335, 596
TaiI	ACGT	2 cut(s)	28, 389
TaqI	TCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	372, 391
TauI	GCSGC	1 cut(s)	198
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	3 cut(s)	198, 422, 437
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	415
Tth111I	GACNNNGTC	2 cut(s)	176, 218
VpaK11BI	GGWCC	3 cut(s)	274, 286, 566
XapI	RAATTY	2 cut(s)	372, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.