Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005931

Physical Location & Seq

Genomic Coordinates Forward (+)

25032260 .. 25036277

Gene Structure 4018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCGCCGGAATGGTTTGGGTCGTCGCGGAGGCCAGGAGATTTCGTCGGATCCAGTTTTGGAGATCGTCTCCGAGCGCCGGTTATGGACATCGTCTCCGAGCGCCTCCACCTCTGCTTCACCGCCTGCGACACCGTCAACTGCACCGACTCCCTCTTTGACAATCTCAACGCCGGCCATGGAGCCGAGGACCGCAAGAAGGACCACCACCACAAAATCATCACCAGCGACTCTTATGCTGGAGACGACGGTGCCGACCCGACCCGGTCAGGGCTTCGCCTTGTTGGAATTTGGATCTTCATGCCCAACCAGGCATCTTCTAGAGTTCTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

111

Amino Acids

12.25

Weight (kDa)

5.63

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005931)

Species	Orthologous Gene IDs
malus_domestica	MD02G1056700.v1.1
rosa_laevigata	RLG00000007304 RLG00000009447 RLG00000014908 RLG00000028056
rosa_roxburghii	Rroxscaffold_3G00226050
rosa_rugosa	Rorug05G0109200 Rorug05G0329000
rosa_samantha	Rh1AG196300 Rh1AG230200 Rh1BG040100 Rh1BG180000 Rh1CG025500 Rh1DG045300 Rh2BG005300 Rh2BG072000 Rh2BG137900 Rh2BG615700 Rh2CG004100 Rh2CG170500 Rh4CG429800 Rh5CG009500 Rh5CG163900 Rh5CG240800 Rh7CG004600 Rh7CG274900
rosa_wichuraiana	Rw4G014150 Rw4G033960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	28, 123, 193
AclWI	GGATC	3 cut(s)	45, 58, 302
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	288
AfiI	CCNNNNNNNGG	3 cut(s)	79, 199, 270
AjnI	CCWGG	2 cut(s)	34, 309
Alw26I	GTCTC	3 cut(s)	74, 100, 237
AlwI	GGATC	3 cut(s)	45, 58, 302
AoxI	GGCC	2 cut(s)	32, 175
ApoI	RAATTY	1 cut(s)	288
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspLEI	GCGC	2 cut(s)	79, 105
AspS9I	GGNCC	2 cut(s)	190, 202
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	112, 214
AvaII	GGWCC	2 cut(s)	190, 202
BamHI	GGATCC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	2 cut(s)	36, 311
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	74, 100, 237
BfaI	CTAG	2 cut(s)	321, 329
BfoI	RGCGCY	2 cut(s)	80, 106
Bme1390I	CCNGG	3 cut(s)	36, 265, 311
Bme18I	GGWCC	2 cut(s)	190, 202
BmgT120I	GGNCC	2 cut(s)	190, 202
BmiI	GGNNCC	3 cut(s)	52, 184, 253
BmrFI	CCNGG	3 cut(s)	36, 265, 311
BmsI	GCATC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	178, 186
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 199, 270
Bse118I	RCCGGY	2 cut(s)	79, 173
Bse1I	ACTGG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	36, 311
BseDI	CCNNGG	2 cut(s)	178, 186
BseLI	CCNNNNNNNGG	3 cut(s)	79, 199, 270
BseNI	ACTGG	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	34, 177
BshNI	GGYRCC	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	8, 80, 174, 265
BslI	CCNNNNNNNGG	3 cut(s)	79, 199, 270
BsmAI	GTCTC	3 cut(s)	74, 100, 237
BsmBI	CGTCTC	3 cut(s)	74, 100, 237
BsnI	GGCC	2 cut(s)	34, 177
Bsp143I	GATC	3 cut(s)	50, 64, 294
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	3 cut(s)	28, 123, 193
BspANI	GGCC	2 cut(s)	34, 177
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	52, 184, 253
BspPI	GGATC	3 cut(s)	45, 58, 302
BspT107I	GGYRCC	1 cut(s)	251
BsrFI	RCCGGY	2 cut(s)	79, 173
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	2 cut(s)	79, 173
BssECI	CCNNGG	2 cut(s)	178, 186
BssMI	GATC	3 cut(s)	50, 64, 294
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	36, 311
Bst4CI	ACNGT	2 cut(s)	136, 251
BstC8I	GCNNGC	2 cut(s)	127, 175
BstDSI	CCRYGG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	2 cut(s)	80, 106
BstHHI	GCGC	2 cut(s)	79, 105
BstKTI	GATC	3 cut(s)	53, 67, 297
BstMAI	GTCTC	3 cut(s)	74, 100, 237
BstMBI	GATC	3 cut(s)	50, 64, 294
BstNI	CCWGG	2 cut(s)	36, 311
BstSCI	CCNGG	3 cut(s)	34, 263, 309
BstUI	CGCG	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	50, 294
BstYI	RGATCY	2 cut(s)	50, 294
BsuRI	GGCC	2 cut(s)	34, 177
BtgI	CCRYGG	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	127, 175
CfoI	GCGC	2 cut(s)	79, 105
Cfr10I	RCCGGY	2 cut(s)	79, 173
Cfr13I	GGNCC	2 cut(s)	190, 202
CviAII	CATG	2 cut(s)	179, 301
CviJI	RGCY	4 cut(s)	34, 177, 185, 274
CviKI_1	RGCY	4 cut(s)	34, 177, 185, 274
DpnI	GATC	3 cut(s)	52, 66, 296
DpnII	GATC	3 cut(s)	50, 64, 294
EaeI	YGGCCR	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	190, 202
EcoRII	CCWGG	2 cut(s)	34, 309
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	3 cut(s)	74, 100, 237
FaeI	CATG	2 cut(s)	182, 304
FaiI	YATR	4 cut(s)	86, 180, 237, 302
FatI	CATG	2 cut(s)	178, 300
FspBI	CTAG	2 cut(s)	321, 329
GlaI	GCGC	2 cut(s)	78, 104
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	2 cut(s)	80, 106
HaeIII	GGCC	2 cut(s)	34, 177
HapII	CCGG	4 cut(s)	8, 80, 174, 265
HhaI	GCGC	2 cut(s)	79, 105
Hin1II	CATG	2 cut(s)	182, 304
Hin6I	GCGC	2 cut(s)	77, 103
HinP1I	GCGC	2 cut(s)	77, 103
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	149, 230
HpaII	CCGG	4 cut(s)	8, 80, 174, 265
HphI	GGTGA	2 cut(s)	112, 214
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	50, 74, 100
Hpy188III	TCNNGA	2 cut(s)	321, 329
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	3 cut(s)	28, 50, 251
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	136, 251
HpyCH4V	TGCA	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	182, 304
HspAI	GCGC	2 cut(s)	77, 103
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	50, 64, 294
LmnI	GCTCC	1 cut(s)	182
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	2 cut(s)	321, 329
MalI	GATC	3 cut(s)	52, 66, 296
MboI	GATC	3 cut(s)	50, 64, 294
MboII	GAAGA	2 cut(s)	289, 309
MflI	RGATCY	2 cut(s)	50, 294
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	143, 224
MmeI	TCCRAC	2 cut(s)	28, 265
MnlI	CCTC	5 cut(s)	24, 116, 122, 164, 181
MroNI	GCCGGC	1 cut(s)	173
MspI	CCGG	4 cut(s)	8, 80, 174, 265
MspR9I	CCNGG	3 cut(s)	36, 265, 311
MvaI	CCWGG	2 cut(s)	36, 311
MvnI	CGCG	1 cut(s)	28
NaeI	GCCGGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	3 cut(s)	50, 64, 294
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	182, 304
NlaIV	GGNNCC	3 cut(s)	52, 184, 253
NmeAIII	GCCGAG	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	175
PflFI	GACNNNGTC	3 cut(s)	92, 134, 265
PleI	GAGTC	2 cut(s)	143, 224
PpsI	GAGTC	2 cut(s)	143, 224
Psp6I	CCWGG	2 cut(s)	34, 309
PspGI	CCWGG	2 cut(s)	34, 309
PspN4I	GGNNCC	3 cut(s)	52, 184, 253
PspPI	GGNCC	2 cut(s)	190, 202
PsuI	RGATCY	2 cut(s)	50, 294
PsyI	GACNNNGTC	3 cut(s)	92, 134, 265
Sau3AI	GATC	3 cut(s)	50, 64, 294
Sau96I	GGNCC	2 cut(s)	190, 202
SchI	GAGTC	2 cut(s)	143, 224
ScrFI	CCNGG	3 cut(s)	36, 265, 311
SetI	ASST	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	323
SinI	GGWCC	2 cut(s)	190, 202
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	28, 123, 193
SspMI	CTAG	2 cut(s)	321, 329
StyD4I	CCNGG	3 cut(s)	34, 263, 309
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	136, 251
TasI	AATT	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	289
Tth111I	GACNNNGTC	3 cut(s)	92, 134, 265
VpaK11BI	GGWCC	2 cut(s)	190, 202
XapI	RAATTY	1 cut(s)	288
XbaI	TCTAGA	2 cut(s)	320, 328
XspI	CTAG	2 cut(s)	321, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.