Rmu_co8306195.1_g000001

General transcription factor IIE subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8306195.1
Physical Location & Seq
Reverse (-)
45 .. 802
758 bp
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UTR
Exon/CDS
Intron
Rmu_co8306195.1_g000001.1.cds

Sequence Viewer

Length: 468 bp
atgaattggatgcaggtacagctgaagcctttaatggaacaaattaatagagttaaagatttaccatttcctgaatttggaagtctccaagcttgggaagccagagcaagtgctccacgacttgcagagaatagtgaatctagtgccattgatccctccatatcttctcatgggctggggtatggtgggatgcccatgccttacgttggagatacaaaggttgaagttgtgttttctaagaatgagggcaagggtaaggatataaaatctcaagctgataatacagacctaaaagttataccaccttggatgatcaagcaagagatgactcttacaagggaacagtgtggagaggtcaggcaaatggaatcctcacaaatgcaagtctctagtcatcaggttcgtcgggttggcatgaagtcagaacgggatgaggatgaaggagatgataatattgactgggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.55

Weight (kDa)

4.86

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 77, 94, 206
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 3 cut(s) 22, 92, 275
AluI AGCT 3 cut(s) 22, 92, 275
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 89, 391
AlwI GGATC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 74
AseI ATTAAT 1 cut(s) 45
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
Bbv12I GWGCWC 1 cut(s) 115
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 89, 391
BfaI CTAG 2 cut(s) 141, 390
BfuAI ACCTGC 1 cut(s) 4
BmsI GCATC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 94, 206
Bse1I ACTGG 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 5 cut(s) 15, 195, 315, 436, 442
BseLI CCNNNNNNNGG 3 cut(s) 77, 94, 206
BseNI ACTGG 1 cut(s) 464
BseYI CCCAGC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 115
BslI CCNNNNNNNGG 3 cut(s) 77, 94, 206
BsmAI GTCTC 2 cut(s) 89, 391
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 151, 312
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 151, 312
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 5 cut(s) 15, 195, 315, 436, 442
BstKTI GATC 2 cut(s) 154, 315
BstMAI GTCTC 2 cut(s) 89, 391
BstMBI GATC 2 cut(s) 151, 312
BstMWI GCNNNNNNNGC 2 cut(s) 19, 98
BtsCI GGATG 5 cut(s) 15, 195, 315, 436, 442
BtsIMutI CAGTG 1 cut(s) 350
BveI ACCTGC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 17
CviAII CATG 3 cut(s) 170, 196, 415
CviJI RGCY 6 cut(s) 22, 28, 92, 101, 175, 275
CviKI_1 RGCY 6 cut(s) 22, 28, 92, 101, 175, 275
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 153, 314
DpnII GATC 2 cut(s) 151, 312
Eco130I CCWWGG 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 3 cut(s) 173, 199, 418
FaiI YATR 7 cut(s) 161, 171, 183, 197, 263, 299, 416
FatI CATG 3 cut(s) 169, 195, 414
FbaI TGATCA 1 cut(s) 312
FokI GGATG 5 cut(s) 22, 202, 322, 443, 449
FspBI CTAG 2 cut(s) 141, 390
GsaI CCCAGC 1 cut(s) 179
Hin1II CATG 3 cut(s) 173, 199, 418
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 3 cut(s) 137, 328, 368
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 1 cut(s) 71
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 13, 125, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 98
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 3 cut(s) 173, 199, 418
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 2 cut(s) 151, 312
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 6 cut(s) 84, 115, 161, 343, 383, 445
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 141, 390
MaeII ACGT 1 cut(s) 204
MalI GATC 2 cut(s) 153, 314
MboI GATC 2 cut(s) 151, 312
MboII GAAGA 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 4, 42, 74
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 5 cut(s) 166, 238, 346, 382, 427
MseI TTAA 3 cut(s) 32, 45, 54
MspA1I CMGCKG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 19, 98
NdeII GATC 2 cut(s) 151, 312
NlaIII CATG 3 cut(s) 173, 199, 418
PfeI GAWTC 2 cut(s) 137, 368
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 3 cut(s) 32, 45, 54
Sau3AI GATC 2 cut(s) 151, 312
SchI GAGTC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 115
SfaNI GCATC 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 3 cut(s) 4, 42, 74
SspI AATATT 1 cut(s) 454
SspMI CTAG 2 cut(s) 141, 390
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 1 cut(s) 207
TasI AATT 3 cut(s) 4, 42, 74
TfiI GAWTC 2 cut(s) 137, 368
Tru1I TTAA 3 cut(s) 32, 45, 54
Tru9I TTAA 3 cut(s) 32, 45, 54
TscAI CASTG 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 17, 431, 453
TspRI CASTG 1 cut(s) 350
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 1 cut(s) 74
XspI CTAG 2 cut(s) 141, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.